Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2129g00001 ATGGGAGCGACCAAGCACGACCAATGGCAGTGGGAGAACGCCACCGCCGGCGCCGCCGCAGGATTCGCCACCGTCGCCGTTGTGCATCCCCTCGACGTTGTCAGAACTAGGTTCCAAGTTAACGATGGTCGAGTCTCTCATCTTCCCAGTTATAAGAACACTGCTCACGCCGTTTTCACCATTGCTCGCTTGGAGGGGTTAAGAGGGTTATATGCAGGCTTTCTTCCTGGGGTTCTTGGGTCAACTATTTCATGGGGTTTATATTTCTTTTTCTATGACAAAGCCAAACAAAGATATGCTAGGAACAGGGAGGAGAAGTTGAACGCAGGTCTTCATCTTGCCTCGGCTGCTGAAGCAGGTGCTTTGGTTTGCTTGTGCACCAATCCTGTTTGGCTAGTAAAAACAAGATTGCAGCTTCAGACTCCTCTTCATCAGACACGGCCATACGCTGGGCTTTACGATGCATTTAGGACCATAATGAGGGAAGAAGGATTTAGTGCACTTTACAGAGGGATAGTTCCTGGTCTATTTCTGGTATCTCATGGTGCTATTCAGTTCACAGCATATGAGGAGCTTCGTAAATTTATTGTCGATTTGAAGAGTAAGGGATGTAAAATACACCATCAAAACCCTGATAAATTGTTGAATTCGGTTGATTATGCCGTTCTTGGAGCAACATCAAAAATTGCTGCAATACTTCTAACTTATCCATTTCAGGTTATACGGGCTCGATTGCAGCAACGACCTAGTGGTGATGGGGTTCCGAGATATATGGACAGTTGGCATGTTGTGAAAGAAACTGCACGGTTAATGGAGTTGGGCAAGGCTACTCACGGCCAGAAGATGTTAAAAGTGCCTTTGCCAGCGAAACCACTTGGGAGCGCCCTCCTGGTCCTTCTCAAGGTGCATGGAAACCAAGAGAAAGACAATATGGCGCCATTTGAATGTGCACTCACTTTTTTCTTTTTGCTTTATTTACTGACAGTACGTTAA 993 0.4632 MGATKHDQWQWENATAGAAAGFATVAVVHPLDVVRTRFQVNDGRVSHLPSYKNTAHAVFTIARLEGLRGLYAGFLPGVLGSTISWGLYFFFYDKAKQRYARNREEKLNAGLHLASAAEAGALVCLCTNPVWLVKTRLQLQTPLHQTRPYAGLYDAFRTIMREEGFSALYRGIVPGLFLVSHGAIQFTAYEELRKFIVDLKSKGCKIHHQNPDKLLNSVDYAVLGATSKIAAILLTYPFQVIRARLQQRPSGDGVPRYMDSWHVVKETARLMELGKATHGQKMLKVPLPAKPLGSALLVLLKVHGNQEKDNMAPFECALTFFFLLYLLTVR 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2129g00001 330 PRINTS Mitochondrial carrier protein signature 23 41 IPR002067 GO:0055085
Gabi2129g00001 330 PRINTS Mitochondrial carrier protein signature 71 89 IPR002067 GO:0055085
Gabi2129g00001 330 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 10 270 IPR044712 GO:0006862|GO:0055085
Gabi2129g00001 330 FunFam Folate transporter 1, chloroplastic 104 285 - -
Gabi2129g00001 330 SUPERFAMILY Mitochondrial carrier 11 268 IPR023395 -
Gabi2129g00001 330 ProSiteProfiles Solute carrier (Solcar) repeat profile. 107 195 IPR018108 -
Gabi2129g00001 330 Pfam Mitochondrial carrier protein 108 197 IPR018108 -
Gabi2129g00001 330 Pfam Mitochondrial carrier protein 9 102 IPR018108 -
Gabi2129g00001 330 Gene3D Mitochondrial carrier domain 2 141 IPR023395 -
Gabi2129g00001 330 FunFam folate transporter 1, chloroplastic isoform X1 1 103 - -
Gabi2129g00001 330 ProSiteProfiles Solute carrier (Solcar) repeat profile. 8 98 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2129g00001 Gabi-Chr2129 3361 19820 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2129g00001 28 248 Chloroplast and Mitochondria Gene Families AT2G47490 40.789 2.69e-38 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2129g00001 K15115 - gmx:100809599 483.026