Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2128g00005 ATGGCGTCTTCAGATGATGAGGGTGAGACTCGGCCACTATCTGTGTCAAATTACCATTTTGAAGATGACAGAGATGCGCCTGTGTCTTTTTCTGTGTTGCCAATTCAATGGAGTGAGTCTGAGAGACTGGGTGGCAAGAATGAGAAGGTTTTCCTGCACGGTTTTGCGGATAATGGGCTGCAGAAGATTTTCATGCAAGTCATAGCGTGGAAGTTTGATATTTCCTATGTGAAGCCTGAGATATCAGTGCTATCAAAGGATGGAAGATGGATTAAACTTCAGAAGCCAAGGAAGAGCTATGAGGATATTATAAGGACTATTTTAGTCACCATTCACTTCTTGAATCTTTTGAAGAAAAATCCTGACATATCTGCAAAATCTGTGTGGGATAACTTGAGTAAGAATAAGGAGTTTAGCTCTTATGAGGTTATGCCTTCGCAAATGGATCTATCAGACCATGTGGCTTTAATGGGTGAAGCTGCCAAAAGGGATGCTGTCTTAGCAAAGTCCCAGCTTTTGCTCATGGTTCTGGAAGATAAGGATAAGCTGAGGATTAAGAAACTTTCTGAAGAGGAAGTTAAAGATTTATCACGACCTGGATTTATAATTGATGATATTGACAACGATATGTTTGATGATACTGTTGAAGAGTCAGATGGAGAGGATGAGTTGTTTGATTCTGTTTGTTCGATTTGTGACAATGGCGGTAAACTTTTGTGTTGTGATGGAAAGTGCATGAGGTCATTTCATGCAGTTGAGGAGGATGGTGAAGAATCTAGTTGTGACTCTCTCGGTTTTAACCGGAAGGAAGTAGATGAGATTCAGAACTTTTATTGTAAGAATTGTGAATATAATAAGCACCAGTGCTTCGCATGTGGCAAACTAGGCTGTTCTGATAAATCTTCAGGTGCTGAGGTCTTTAAATGTGCTTCTGCAACCTGTGGCTTCTTTTATCATCCACAATGTGTTGCAAAGTTACTTCACCGGGTGGTTGAGGATGCTCCACAGGAACTTGAGAAAAATATTGCTGGGGGAGAACCTTTTACTTGTCCTACTCATTATTGCTGTGTCTGTAAAGAAATGGAAAACAAGAAGGAACATGATTTACACTTTGCTGTCTGTAGGCGTTGTCCTAAGTCATATCATCGCAAATGTTTGCCAAGAAAGATCGCTTTTGATGACATAGAGGAAGAAGATATTATAACGAGGGCTTGGGAAGGACTTTTACCAAACAATCGCATTCTTATATATTGCTTAAAACATGAGATTGATGATGAACTTGGGACTCCTATAAGAGATCATATAAAATTCCCCAATTTTAAAGCTACTGTACGAGAAATTAATGCTGAGGAGAAGAGAAAGCCAGCAACCAAAGAGAGAGTTATGTTGAACAAGGACAATGCTGACTTACATAATTTACTTAGCAAAAGAAATACTGCTAAAGTATCTAAACTGTCTGGTAAGATGTCTTCTGCGAAAGTTGGTATCAAGAAGTCTGAACAGATTTTTGGATCAAATATCTCAAGGAAGAAAGTAAATGAAGCATCAAGGTTTTTGAATGAAAATAAGAGGTCAATCTCGAAGGAAACTGAAAGGTCTGACTGTGAGGAAAACAAGCTCTCATTGGGTAAGAAATTATATGCTTACATGCAGAAGGGTTCTGAGCAAATTAATTCTGGCAATCAGGTTGATAATGTAGCTAATAACACCCTGTCAGTGAAGCCGACTAAAAAACTGAGTAAAGCATTGCCCGCATTAGATGCAGATTCAGAGAGGAGATTGTTGGCTTTGTTTAAAGAAGCTACATCATCAGTTACTTTGGCGAATGTCATAAAAGAACATAAATTTGCTTCTACTCATGCTCATTCGTTGAAAAATGTTGTGGAGAAGACCATTAGAGTGGGCAAGTTGGAAGGCTCGGTTGAGGCTGTTAGAACAGCTCTAAGGATGCTAGAGGATGGGCACAGCATTCGAGATGCAGAAGCTGTTTGTGAACCTGATGTTCTTAACCAAATATTCAAGTGGAAGGACAAGCTGAGAGTATATCTTGCACCTGTTCTATGTGGTAATCGCTACACATCATATGGTCGCCATTTTACTCAATTGGAAAAGCTGGAAGGGATTGTTGATAGACTTCATTGGTATGTTCAGAATGGTGATACAATCGTGGACTTTTGTTGTGGCGCAAATGATTTTAGCACCCTTATGAAGAAAAAGCTCGAAGAGAATGGGAAGAGATGCTCATACAAAAACTATGATTTACTTCCAACGAAGAATGATTTTAATTTTGAGATGAGAGATTGGATGACCGTCCAGCCAAAAGAGTTGCCTACAGGGTCGCAATTGATCATGGGCCTCAATCCTCCCTTTGGGCTTAAAGCAGCTTTGGCTAACAAGTTTATAGATAAGGCTCTCGAGTTCAGACCGAAGCTCATGATTCTTATAGTACCACCTGAGACAGAGAGGCTGGATAAAAAACGGTCGCCGTATGATCTTGTCTGGCAGGATGAGAATTTCCTAGCAGGCAAGTCTTTTTATCTACCTGGATCAGTTGATGCCAATGACAGGCAAATAGAGCAATGGAATGTTAAGCCTCCCCCGCTCTACCTTTGGAGCCGTCCGGACTGGACTGATAAGCACATGGTCATAGCCCAGGAGCATGGTCACCTGTTCAGCCAGCATGAAGTATTAAAAACGGAAAGCTTTAATGATGAAAAGTCACCTGCCAGTCACACTATGGATGGTAACCATGTTGATGATCTCTTTCTGGGTCATGATCTCTTGAAGTCAACTGATAACGAAGAAGATCATGCGTCTATGAATGAAAGTCAGAAAGGAAGCTCGCCGCATGGAAATGTTGATCGAGAGAGTCAAGATAGACAGGAATATTGGGTGAAGATGGCTGAGAATACCTCATGGAAGAGGAAACGAACAGAGGAAAATGAGGGCGGTGGACTAAGTGTGACATCACCAGCCAAAATGCAGGCTGTAAATCAAATGGTTGAGGAAGTACTTGACCGTAGTCAATCCAATCCAGATGATGGGAGAGTTGAAGGTTATCAGCCCAAATCTGTTATGTCACCTACGTATATTGATTTTGGTGACAATGGTAATTGGCATTTGGATCCCCCCTCTTCCTCACGTATGGAGTTTGGAGTTGCCTCTAGTGTTGTCGATCCTCTTTCTGATTATGGGGTTACAGATATAGAGGAACACCATAGCAGCCTCCTAGGAGACAGCACCAATAGCATTGGATATAGACCCTATATCATGGAGGATCAGAATTACCTGAGAGAATTGGAGACAAGGCAACAGACTCGCCTTTACGGGCTGCAGAATCCTGATTCTATGAGGAGTAATAATCTATCTGGTCATGATTCTGCTTATAGCCAAATGGGATCTAGTTATGGGTTACTCAGTTCAGTACCCGATTCATCTTACATGATGAATACATCAACTATGCAACGATATGCACCTCGGCTAGATGAATTAAATCCTGTCAGGATGGATTCTTTGGGATCTGAACCTCCTATTGTTGGTAGAAATGGCACTTTTGAACCTAGTGTGCCCCAACCTGGATATGGAACTGGGCTGCCTCCTTTTGCAACCGGTCCTCACAATTTGTATTCACGCCAGAATTCAGCGGGTCGGTAG 3654 0.4138 MASSDDEGETRPLSVSNYHFEDDRDAPVSFSVLPIQWSESERLGGKNEKVFLHGFADNGLQKIFMQVIAWKFDISYVKPEISVLSKDGRWIKLQKPRKSYEDIIRTILVTIHFLNLLKKNPDISAKSVWDNLSKNKEFSSYEVMPSQMDLSDHVALMGEAAKRDAVLAKSQLLLMVLEDKDKLRIKKLSEEEVKDLSRPGFIIDDIDNDMFDDTVEESDGEDELFDSVCSICDNGGKLLCCDGKCMRSFHAVEEDGEESSCDSLGFNRKEVDEIQNFYCKNCEYNKHQCFACGKLGCSDKSSGAEVFKCASATCGFFYHPQCVAKLLHRVVEDAPQELEKNIAGGEPFTCPTHYCCVCKEMENKKEHDLHFAVCRRCPKSYHRKCLPRKIAFDDIEEEDIITRAWEGLLPNNRILIYCLKHEIDDELGTPIRDHIKFPNFKATVREINAEEKRKPATKERVMLNKDNADLHNLLSKRNTAKVSKLSGKMSSAKVGIKKSEQIFGSNISRKKVNEASRFLNENKRSISKETERSDCEENKLSLGKKLYAYMQKGSEQINSGNQVDNVANNTLSVKPTKKLSKALPALDADSERRLLALFKEATSSVTLANVIKEHKFASTHAHSLKNVVEKTIRVGKLEGSVEAVRTALRMLEDGHSIRDAEAVCEPDVLNQIFKWKDKLRVYLAPVLCGNRYTSYGRHFTQLEKLEGIVDRLHWYVQNGDTIVDFCCGANDFSTLMKKKLEENGKRCSYKNYDLLPTKNDFNFEMRDWMTVQPKELPTGSQLIMGLNPPFGLKAALANKFIDKALEFRPKLMILIVPPETERLDKKRSPYDLVWQDENFLAGKSFYLPGSVDANDRQIEQWNVKPPPLYLWSRPDWTDKHMVIAQEHGHLFSQHEVLKTESFNDEKSPASHTMDGNHVDDLFLGHDLLKSTDNEEDHASMNESQKGSSPHGNVDRESQDRQEYWVKMAENTSWKRKRTEENEGGGLSVTSPAKMQAVNQMVEEVLDRSQSNPDDGRVEGYQPKSVMSPTYIDFGDNGNWHLDPPSSSRMEFGVASSVVDPLSDYGVTDIEEHHSSLLGDSTNSIGYRPYIMEDQNYLRELETRQQTRLYGLQNPDSMRSNNLSGHDSAYSQMGSSYGLLSSVPDSSYMMNTSTMQRYAPRLDELNPVRMDSLGSEPPIVGRNGTFEPSVPQPGYGTGLPPFATGPHNLYSRQNSAGR 1217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2128g00005 1217 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 401 IPR013083 -
Gabi2128g00005 1217 MobiDBLite consensus disorder prediction 1175 1217 - -
Gabi2128g00005 1217 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 225 286 IPR013083 -
Gabi2128g00005 1217 Pfam Cytosine specific DNA methyltransferase replication foci domain 14 133 IPR022702 -
Gabi2128g00005 1217 CDD PHD2_NSD 288 353 - -
Gabi2128g00005 1217 PANTHER PHD FINGER-CONTAINING PROTEIN DDB_G0268158 5 909 - -
Gabi2128g00005 1217 SMART PHD_3 288 354 IPR001965 -
Gabi2128g00005 1217 SMART PHD_3 355 422 IPR001965 -
Gabi2128g00005 1217 SMART PHD_3 228 283 IPR001965 -
Gabi2128g00005 1217 MobiDBLite consensus disorder prediction 933 959 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2128g00005 Gabi-Chr2128 74615 95517 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2128g00005 217 329 PHD Transcription Factor Family AT3G14980 29.204 9.86e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2128g00005 - - gmx:100803073 1834.69