Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2124g00008 ATGGAGGAGGGTCAATGTTTGATGTGGACTAATAAGAGGAAGTACTCTGTGAGCTCTAATCTTACTTCACCAACTAGTTACCCTTCATCTTATGATGATGACTCATGGGAAGAACAAGCTTTTGCAAAAGATGCATCTGGGTCTGGTTGCACATGGCCACCAAGATCATATTCTTGTAGCTTTTGCAGAAGAGAGTTCAGGTCAGCACAGGCTTTAGGTGGCCATATGAATGTTCATAGAAGGGATAGAGCAAGATTAAAACAACCATCTAGCCCCCAAAATGAAATTCTTAGTCATGATCTTGAAACTCACCCCCACAATGTTCCAGTTCAAAATTCTTTTACCTCTTTGGGTTTACCATCCCCATCTTCTCTTAGTGGATTGGTTTATAATACTAACCCTAATATTTCTGATCCTTCTCATGTTCTTTCTTCAACTTCTAAGAAGAATTGCAAAGAGAAAACCCTGATTCCACTTTATAATTCTTCTATTTTACATGAGAATTCCCCTGCAAATTCCTCTAAATCCTGGTCAAATTCAGCTGAAGAGTGCAGATTATATTCACATAAGTTCAACCCTGAAGCTGGTGTTGAGAAAGTTTCAAAAGAATTGGATTCTGGGAGTAAGGGGGATAATGATAAACTTGACATGGCTGTGAGCTTGAACTTGTTTGTGTGTCGAGCTCACCCACCTGTGCAGTTTGAGACTAAAGAGGAAGATACATGTTTCAAGAAGAGGAAAATAGATGCTTCATCTCTTCCATTCTTTTCAAAATCAAGTTCAGGTGATAAGCATCATATGCAGTCACAGATGTGTGAATTTGTACCTTGCTCCATAGAAGAGCTAGATCTGGAGCTAAGGCTTGGGTACGGGCCCAAGGTATAG 885 0.3989 MEEGQCLMWTNKRKYSVSSNLTSPTSYPSSYDDDSWEEQAFAKDASGSGCTWPPRSYSCSFCRREFRSAQALGGHMNVHRRDRARLKQPSSPQNEILSHDLETHPHNVPVQNSFTSLGLPSPSSLSGLVYNTNPNISDPSHVLSSTSKKNCKEKTLIPLYNSSILHENSPANSSKSWSNSAEECRLYSHKFNPEAGVEKVSKELDSGSKGDNDKLDMAVSLNLFVCRAHPPVQFETKEEDTCFKKRKIDASSLPFFSKSSSGDKHHMQSQMCEFVPCSIEELDLELRLGYGPKV 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2124g00008 294 SMART c2h2final6 57 79 IPR013087 -
Gabi2124g00008 294 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 84 IPR013087 -
Gabi2124g00008 294 SUPERFAMILY beta-beta-alpha zinc fingers 54 83 IPR036236 -
Gabi2124g00008 294 PANTHER OS07G0101800 PROTEIN 30 291 - -
Gabi2124g00008 294 Pfam C2H2-type zinc finger 57 81 - -
Gabi2124g00008 294 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Gabi2124g00008 294 Gene3D Classic Zinc Finger 45 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2124g00008 Gabi-Chr2124 165066 165950 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2124g00008 35 292 C2H2 Transcription Factor Family AT2G37740 33.333 1.52e-26 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi2124g00008 zf-C2H2_6 1.2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2124g00008 - - vra:106758996 328.176