Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2124g00006 ATGGATTTCAATACCACAAACTCTAACAAATCTGAGCAAATAAGATGGGGTTCAGATGATCAAGGTGGTTCAGGACAAGTTAGATCTTATTCTTGTGCCTTTTGCAAAAGAGGGTTCTCAAATGCACAGGCACTAGGAGGCCACATGAATATCCATAGAAGAGATAGAGCCAAGCTCAAGCAATCTTCTGAAGAAAATTTGCTTTCATTGGACATCTCAATGAAGAACACAAGAGACAATGAGCCTGTTGATTTGGAAGAGAAAATTTTGTTCCAATTGGATTCTGGGGAAGAAAAACATGCTAGTAGTGTTAAGAAGCCATTCAATTTTCCTGACAAAGATTATGATCATGCTTCTCAAAGGGGTAAGTTAATTGGTGCTGCAGAACTTCCTCATCTTCCATCATTTGTTGGGAGGTTAACTTCAACCACTGAGATAAAGGGTAGTGTTGGGATGCAGAGGATTGAAGAGAAGAAAGCTGATTTAGACCTTGAGCTTAGGTTAGGCCTTGAGCCACAGGAGGCACCAATATTGAGCACCAGAGCATTCTTTTGA 555 0.4036 MDFNTTNSNKSEQIRWGSDDQGGSGQVRSYSCAFCKRGFSNAQALGGHMNIHRRDRAKLKQSSEENLLSLDISMKNTRDNEPVDLEEKILFQLDSGEEKHASSVKKPFNFPDKDYDHASQRGKLIGAAELPHLPSFVGRLTSTTEIKGSVGMQRIEEKKADLDLELRLGLEPQEAPILSTRAFF 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2124g00006 184 Gene3D Classic Zinc Finger 7 88 - -
Gabi2124g00006 184 PANTHER OS07G0101800 PROTEIN 10 172 - -
Gabi2124g00006 184 SUPERFAMILY beta-beta-alpha zinc fingers 28 56 IPR036236 -
Gabi2124g00006 184 ProSitePatterns Zinc finger C2H2 type domain signature. 32 52 IPR013087 -
Gabi2124g00006 184 ProSiteProfiles Zinc finger C2H2 type domain profile. 30 57 IPR013087 -
Gabi2124g00006 184 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2124g00006 Gabi-Chr2124 85654 86208 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2124g00006 26 172 C2H2 Transcription Factor Family AT3G53820 35.374 6.09e-18 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi2124g00006 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2124g00006 - - ccaj:109793777 235.343