Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2123g00004 ATGGAAAAGATGAACTTTGTTAAAAATAGAGTGACCAAATTGCCTCCTGGTTTTCGTTTTCAACCAACAGACGAAGAGCTTGTCTTTCAGTACTTGAAATGTAAGATCTTCTCGTGCCAGTTACCTGCTTCAATCATCCCTGAGATCAATGTCTGCAATTTCGATCCTTGGGATTTGCCAGGAACTTGTGATCAACAAGAGAGGTACTTTTTCAGCTTTAAGGAGGCCAAGTATCGAAACGGTAATCGCATGAAACGAACAACAAACTCTGGCTATTGGAAGGCAACAGGAGCAGACAAAAGAATTTCATCATCAATAAGTAATGGTATTGTGGGAATAAGAAAAACTCTTGTATTTTATGAAGGGAAATCTCCAAATGGGTCTCGAACTGATTGGGTCATGCATGAATATCGCCTCATTAGTTTAGAAACAACTCCTTGTAATTCATCCCAGAACTATGCAAACGAGATAGGGGATTGGGTTCTGTGTCGCATATTCATGAAGAAAAGAAGTACAGAAAGTGATTGCAACAGTACTGCTCCTATGCTGAAGAACAATACAGTGATGAATGTTCAGGTGACTAAGCCAATATTCTATGATTTTATGAGGGTACACAAATCAGCTCTGGTTCCTATCCAGTCTTCTACATCCTCATCTTGTTCAAGCACTAGTGACATTATAGAGGTCTCTTCATCAGACCTCGAAGAAACAAGTGCCTATGCTGACTGTTAA 732 0.3962 MEKMNFVKNRVTKLPPGFRFQPTDEELVFQYLKCKIFSCQLPASIIPEINVCNFDPWDLPGTCDQQERYFFSFKEAKYRNGNRMKRTTNSGYWKATGADKRISSSISNGIVGIRKTLVFYEGKSPNGSRTDWVMHEYRLISLETTPCNSSQNYANEIGDWVLCRIFMKKRSTESDCNSTAPMLKNNTVMNVQVTKPIFYDFMRVHKSALVPIQSSTSSSCSSTSDIIEVSSSDLEETSAYADC 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2123g00004 243 Gene3D NAC domain 23 173 IPR036093 GO:0003677|GO:0006355
Gabi2123g00004 243 ProSiteProfiles NAC domain profile. 14 168 IPR003441 GO:0003677|GO:0006355
Gabi2123g00004 243 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 213 - -
Gabi2123g00004 243 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Gabi2123g00004 243 SUPERFAMILY NAC domain 10 168 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2123g00004 Gabi-Chr2123 111787 113170 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2123g00004 1 239 NAC Transcription Factor Family AT5G13180 50.579 3.25e-77 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi2123g00004 NAM 1.2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2123g00004 - - aprc:113868555 364.77