Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2123g00001 ATGGGTTGCGTACTTGGGACGCCGGCAGATGCCGGAGCTCAGCGCCGTCGACGGAGCGGCCAGCGTAACGTTGGTTCTGATGGAGGTAGTAATGCCGTTGCGGTTCGGGAGAGGAAAAGGAATCCTCACACCGGCGATTTTCCGGGAAGTCTTCCGGCGCCGGAGCGCCGGAAACCTAGACTCGATCCGTGCGCGGTGACTCAACAGGGTTGGCCGTCTTGGTTGATGGCCGTCGCCGGCGACGCAATCGGCGATTGGACTCCTCGTCGCGCCAACACGTTCGAGAAGCTTGCTAAGATTGGGCAAGGGACGTATAGCAATGTGTATAAGGCTAGAGACCTTCTTACGGGAAAGATTGTGGCTTTGAAGAAAGTTAGATTTGATAATTTGGAGCCAGAAAGTGTGAAGTTCATGGCAAGAGAGATACTTGTTTTGAGGAAGCTTGATCACCCCAATGTTGTAAAGCTTGAGGGCTTGGTTACTTCTAGAATGTCATGCAGTCTTTACTTGGTATTTGAGTATATGGAACATGATCTTGCTGGGCTTGCAGCTGGGCAAGGTGTTAAGTTCACTGAGCCTCAGGTCAAATGCTTTATGAAGCAATTACTTTCTGGTCTTGAGCATTGCCACAGTCGAGGTGTATTGCACCGTGATATCAAGGGTTCCAATCTGCTTATTAACGATGAAGGAATCCTTAAAATTGCAGATTTTGGGCTGGCAACTTTCTTTGATCCTAAGCTAAAGCAGTCCATGACAAGCAGAGTTGTGACCCTTTGGTATCGTCCCCCTGAGCTTCTTCTTGGGGCAACATTTTATGGGGTTGGTATTGACCTTTGGAGTGCTGGTTGCATCTTGGCAGAGCTGCTTGCTGGAAAGCCAATCATGCCTGGCCGAACAGAGGTTGAACAACTGCACAAAATATTTAAGCTGTGTGGTTCTCCATCTGAGGAATATTGGAAGAAATATAGATTGCCAAATGCTACAATCTTTAAGCCACAGCAGCCATATAGACGTTGCATCTCCGAAACATTCAAGGATTTTCCTCCTTCTTCACTACCTATAATTGAAACTCTTCTTGCAATAGATCCTGATGATCGTGGCACTGCCTCAGCTGCTCTAAATAGTGAATTCTTTACCACTGAGCCATATGCTTGTGAACCTTCGGGTTTGCCAAAGTATCCTCCCAGCAAAGAATTGGATGTGAAACTGAGAGATGAAGAAGCAAGAAGGCAAAAAGCTCTAAGCGGAAAAGCTAATGCTGTTGATGGTACCAAGAAAGTCAGAACACGTGAGCGTGGTCGGGCCATTCCAGCCCCCGAAGCCAATGCAGAGATCCAAACAAACTTAGATAGGTGGAGAGTTGTGACCCATGCAAATGCAAAAAGCAAGAGTGAGAAATTTCCACCTCCTCATCAAGATGGAGCTGTTGGATATCCGCAGGAGGCATCAAATAAAGGACCCATTTCATTTGGCGCCACTGACACTTCTTTTGACTCAGGGATATTCATTTCAAAACCATCTGGACCTGTTAGAAGTCATGCTGCTGCAGGACTTTACAGAGGAACCAAAACTAGAAAAGAAGATTCCCAGATGGCCTCGTCATGGAAATTTATGCGTCCATTCAAGCCATCAACTATTGGTCTTTCAATGGATTTATTATTTAGGAGCAAATAA 1674 0.4659 MGCVLGTPADAGAQRRRRSGQRNVGSDGGSNAVAVRERKRNPHTGDFPGSLPAPERRKPRLDPCAVTQQGWPSWLMAVAGDAIGDWTPRRANTFEKLAKIGQGTYSNVYKARDLLTGKIVALKKVRFDNLEPESVKFMAREILVLRKLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAAGQGVKFTEPQVKCFMKQLLSGLEHCHSRGVLHRDIKGSNLLINDEGILKIADFGLATFFDPKLKQSMTSRVVTLWYRPPELLLGATFYGVGIDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKYRLPNATIFKPQQPYRRCISETFKDFPPSSLPIIETLLAIDPDDRGTASAALNSEFFTTEPYACEPSGLPKYPPSKELDVKLRDEEARRQKALSGKANAVDGTKKVRTRERGRAIPAPEANAEIQTNLDRWRVVTHANAKSKSEKFPPPHQDGAVGYPQEASNKGPISFGATDTSFDSGIFISKPSGPVRSHAAAGLYRGTKTRKEDSQMASSWKFMRPFKPSTIGLSMDLLFRSK 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2123g00001 557 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
Gabi2123g00001 557 ProSitePatterns Protein kinases ATP-binding region signature. 100 123 IPR017441 GO:0005524
Gabi2123g00001 557 SUPERFAMILY Protein kinase-like (PK-like) 88 383 IPR011009 -
Gabi2123g00001 557 PANTHER CELL DIVISION PROTEIN KINASE 92 382 - -
Gabi2123g00001 557 Gene3D Transferase(Phosphotransferase) domain 1 177 418 - -
Gabi2123g00001 557 CDD STKc_CDK9_like 94 378 - -
Gabi2123g00001 557 Gene3D Phosphorylase Kinase; domain 1 81 176 - -
Gabi2123g00001 557 Pfam Protein kinase domain 94 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2123g00001 557 FunFam probable serine/threonine-protein kinase At1g54610 177 418 - -
Gabi2123g00001 557 ProSiteProfiles Protein kinase domain profile. 94 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2123g00001 557 SMART serkin_6 94 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2123g00001 557 FunFam probable serine/threonine-protein kinase At1g54610 81 176 - -
Gabi2123g00001 557 MobiDBLite consensus disorder prediction 1 60 - -
Gabi2123g00001 557 MobiDBLite consensus disorder prediction 412 432 - -
Gabi2123g00001 557 MobiDBLite consensus disorder prediction 460 490 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2123g00001 Gabi-Chr2123 10564 15091 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2123g00001 86 412 Core Cell Cycle Gene Families AT5G10270 50.146 7.67e-114 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Gabi2123g00001 Pkinase 2.1e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2123g00001 K08819 - gmx:100793033 1028.08