Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2115g00013 ATGGGTCGCAATGTACAAGCGACGTGCACACAGAACTGTCTATTGTTTCACGGAACAGCGAAACCCTCTCCTACCTCTTTCTTCAAGGTCATGGCTGATGACGACTATTTCAGAGTTTTGTATATACCTCCGAAGTTTAGTTCTACTGTATCACCCTTGGTTAATAAGAAAATCATTCTCAAGGATTCAAGTGGGCAACAATGGAATGTTACGGTATCAAATGTTGATGGTTCTTTTGCTTTTGGGGAAGGATGGAATGTTTTTTCAGTGGATCATGGCCTTAAAATTGGATATTTTCTGGTATTCAATTATATTAATGAATTGCACTTTGATGTCAAGATCTATGATAATTCTGGGTGTGAAAGGCTTGATTTTTCTACAAAAAGAAATCAGAAGAAACGAAGTAGGGACAAAGGTGGGAAGTTTGTTAGACAAGACCCAAATTCCTCAGTTTTCTCCAAGCAGGATGTGCCAAAAATGAAAAGCCAGCACAAGGGGGAGGATGATATAGGAGGAACAAGAAATAACAGAGAGAATATTTCGAAATATGATGGTAATAATGGAAGGGCCCAATCTGTGCGCATATCAGAACACTTTGAAGACCCAAGTCACATGACAAACAGAGAATTTGAAGACAAAAAAAGAGATGACCATACCTGTGGTGTTGATGGGACTGTGAAAATTACAACTGGTTCTCATGTAGTTAATGGATCCCATATATATCAAAATGATGCAACCAAATGTAATAATAAAGATCCTATCTTTGAAGGGGTATTGGGTACAGGAGGTACCTCAGATGCATCTGAATTTGAAATTTCTGGAAGAAATAATTCTCTTGGAGAGACAGATAAAAGCACATATGACAAGTCTTCTACCTTAAAACCTGATGAAAACAGAGAGAACAAATCCATTATGTCCAAGAGGAAAGTTCAGGAGTGCCATTTTGCCGAGGGCTTAGAAAGTGAACAGGCAGCGATATCAAAAAAGAAACATGCTTTGCATATTGGTGGTTTTCAAAACACTAAACAGATGTTCGATGGGATCTCAAATCACTTAGGTGAAATGAAGAAAGTGCCTGTGGAAATGACTCCCACATTGTGTAGTTTCAAGGATAAATTGATTGCAAAAGGTGAACTATCTAAAAAGATTAAGAAAGAGCTTGTGACTTCCGATGTGTACAATAACAAGGATGAATTGGGAGCAACAGATTCTGTCTCATGGATAAATCTTTCGTGCGATTGTAGGAGGGTTGCCAAAGGTTATAAAGGAAGAGTGCGATCCCAGTTCTCACACGTTTAA 1299 0.3841 MGRNVQATCTQNCLLFHGTAKPSPTSFFKVMADDDYFRVLYIPPKFSSTVSPLVNKKIILKDSSGQQWNVTVSNVDGSFAFGEGWNVFSVDHGLKIGYFLVFNYINELHFDVKIYDNSGCERLDFSTKRNQKKRSRDKGGKFVRQDPNSSVFSKQDVPKMKSQHKGEDDIGGTRNNRENISKYDGNNGRAQSVRISEHFEDPSHMTNREFEDKKRDDHTCGVDGTVKITTGSHVVNGSHIYQNDATKCNNKDPIFEGVLGTGGTSDASEFEISGRNNSLGETDKSTYDKSSTLKPDENRENKSIMSKRKVQECHFAEGLESEQAAISKKKHALHIGGFQNTKQMFDGISNHLGEMKKVPVEMTPTLCSFKDKLIAKGELSKKIKKELVTSDVYNNKDELGATDSVSWINLSCDCRRVAKGYKGRVRSQFSHV 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2115g00013 432 MobiDBLite consensus disorder prediction 270 286 - -
Gabi2115g00013 432 MobiDBLite consensus disorder prediction 287 305 - -
Gabi2115g00013 432 Gene3D - 19 120 IPR015300 -
Gabi2115g00013 432 MobiDBLite consensus disorder prediction 126 189 - -
Gabi2115g00013 432 MobiDBLite consensus disorder prediction 270 305 - -
Gabi2115g00013 432 CDD B3_DNA 26 116 IPR003340 GO:0003677
Gabi2115g00013 432 SMART B3_2 27 118 IPR003340 GO:0003677
Gabi2115g00013 432 MobiDBLite consensus disorder prediction 158 175 - -
Gabi2115g00013 432 Pfam B3 DNA binding domain 27 117 IPR003340 GO:0003677
Gabi2115g00013 432 PANTHER B3 DOMAIN-CONTAINING 22 216 - -
Gabi2115g00013 432 SUPERFAMILY DNA-binding pseudobarrel domain 21 120 IPR015300 -
Gabi2115g00013 432 ProSiteProfiles B3 DNA-binding domain profile. 25 118 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2115g00013 Gabi-Chr2115 258680 261074 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2115g00013 27 122 B3 DNA Binding Superfamily AT5G66980 34.000 4.39e-10 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gabi2115g00013 B3 1.8e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2115g00013 - - gmx:102661564 372.089