Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2115g00012 ATGGGTCGCAATGTACAAGCGACGTGCACACAGAACTGTCTATTGTTTCACGGAACAGCGAAACCCTCTCCTACCTCTTTCTTCAAGGTCATGGCTGATGACGACTATTTCAGAGTTTTGTATATACCTCCGAAGTTTAGTTCTACTGTATCACCCTTGGTTAATAAGAAAATCATTCTCAAGGATTCAAGTGGGCAACAATGGAATGTTACGGTATCAAATGTTGATGGTTCTTTTGCTTTTGGGGAAGGATGGAATGTTTTTTCAGTGGATCATGGCCTTAAAATTGGATATTTTCTGGTATTCAATTATATTAATGAATTGCACTTTGATGTCAAGATCTATGATAATTCTGGGTGTGAAAGGCTTGATTTTTCTACAAAAAGAAATCAGAAGAAACGAAGTAGGGACAAAGGTGGGAAGTTTGTTAGACAAGACCCAAATTCCTCAGTTTTCTCCAAGCAGGATGTGCCAAAAATGAAAAGCCAGCACAAGGGGGAGGATGATATAGGAGGAACAAGAAATAACAGAGAGAATATTTCGAAATATGATGGTAATAATGGAAGGGCCCAATCTGTGCGCATATCAGAACACTTTGAAGACCCAAGTCACATGACAAACAGAGAATTTGAAGACAAAAAAAGAGATGACCATACCTGTGGTGTTGATGGGACTGTGAAAATTACAACTGGTTCTCATGTAGTTAATGGATCCCATATATATCAAAATGATGCAACCAAATGTAATAATAAAGATCCTATCTTTGAAGGGGTATTGGGTACAGGAGGTACCTCAGATGCATCTGAATTTGAAATTTCTGGAAGAAATAATTCTCTTGGAGAGACAGATAAAAGCACATATGACAAGTCTTCTACCTTAAAACCTGATGAAAACAGAGAGAACAAATCCATTATGTCCAAGAGGAAAGTTCAGGAGTGCCATTTTGCCGAGGGCTTAGAAAGTGAACAGGCAGCGATATCAAAAAAGAAACATGCTTTGCATATTGGTGGTTTTCAAAACACTAAACAGATGTTCGATGGGATCTCAAATCACTTAGGTGAAATGAAGAAAGTGCCTGTGGAAATGACTCCCACATTGTGTAGTTTCAAGGATAAATTGATTGCAAAAGGTGAACTATCTAAAAAGATTAAGAAAGAGCTTGTGACTTCCGATGTGTACAATAACAAGGATGAATTGGGAGCAACAGGAGGGTTGCCAAAGGTTATAAAGGAAGAGTGCGATCCCAGTTCTCACACGTTTAATCAAGATAATGGGAGTCACTTCAAAACAGCAACCACTTTCTCTTGTGTGGTGCCGGCTGACAGTGATTGTCTTAAATTGCCAGCACGCTTGCCTTTGTCTCGCAGGGGAAGAGTACAAATAGACAGGATGGTGGTGTTCCTTCGTGATCCACTGAGGAGATTGTGGCCGGTCCTTTACCATGAACAACCATTGTTCAAAATACTGACAAAAGGATGGTTACATTTTTGCAAAGCAAATAATATTCAACCAGAAGATATGTGTATTTTTGGGGTTGAGAACGAGTCTGAACATATCGTTGCCGTAGATATAGTCCACAAGTAA 1584 0.3927 MGRNVQATCTQNCLLFHGTAKPSPTSFFKVMADDDYFRVLYIPPKFSSTVSPLVNKKIILKDSSGQQWNVTVSNVDGSFAFGEGWNVFSVDHGLKIGYFLVFNYINELHFDVKIYDNSGCERLDFSTKRNQKKRSRDKGGKFVRQDPNSSVFSKQDVPKMKSQHKGEDDIGGTRNNRENISKYDGNNGRAQSVRISEHFEDPSHMTNREFEDKKRDDHTCGVDGTVKITTGSHVVNGSHIYQNDATKCNNKDPIFEGVLGTGGTSDASEFEISGRNNSLGETDKSTYDKSSTLKPDENRENKSIMSKRKVQECHFAEGLESEQAAISKKKHALHIGGFQNTKQMFDGISNHLGEMKKVPVEMTPTLCSFKDKLIAKGELSKKIKKELVTSDVYNNKDELGATGGLPKVIKEECDPSSHTFNQDNGSHFKTATTFSCVVPADSDCLKLPARLPLSRRGRVQIDRMVVFLRDPLRRLWPVLYHEQPLFKILTKGWLHFCKANNIQPEDMCIFGVENESEHIVAVDIVHK 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2115g00012 527 MobiDBLite consensus disorder prediction 270 286 - -
Gabi2115g00012 527 SUPERFAMILY DNA-binding pseudobarrel domain 21 120 IPR015300 -
Gabi2115g00012 527 ProSiteProfiles B3 DNA-binding domain profile. 466 527 IPR003340 GO:0003677
Gabi2115g00012 527 MobiDBLite consensus disorder prediction 126 189 - -
Gabi2115g00012 527 CDD B3_DNA 26 116 IPR003340 GO:0003677
Gabi2115g00012 527 Pfam B3 DNA binding domain 27 117 IPR003340 GO:0003677
Gabi2115g00012 527 Pfam B3 DNA binding domain 462 518 IPR003340 GO:0003677
Gabi2115g00012 527 MobiDBLite consensus disorder prediction 158 175 - -
Gabi2115g00012 527 CDD B3_DNA 463 510 IPR003340 GO:0003677
Gabi2115g00012 527 ProSiteProfiles B3 DNA-binding domain profile. 25 118 IPR003340 GO:0003677
Gabi2115g00012 527 PANTHER B3 DOMAIN-CONTAINING 22 513 - -
Gabi2115g00012 527 SMART B3_2 27 118 IPR003340 GO:0003677
Gabi2115g00012 527 SMART B3_2 433 525 IPR003340 GO:0003677
Gabi2115g00012 527 MobiDBLite consensus disorder prediction 287 305 - -
Gabi2115g00012 527 Gene3D - 411 527 IPR015300 -
Gabi2115g00012 527 MobiDBLite consensus disorder prediction 270 305 - -
Gabi2115g00012 527 Gene3D - 19 120 IPR015300 -
Gabi2115g00012 527 SUPERFAMILY DNA-binding pseudobarrel domain 427 521 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2115g00012 Gabi-Chr2115 258680 261737 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2115g00012 27 122 B3 DNA Binding Superfamily AT5G66980 34.000 7.02e-10 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gabi2115g00012 B3 2.5e-14 CL0405