Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2115g00010 ATGGAGTCTTCTGAATCCGAATCAGTTGGTTTCTCCAGCAAAGACCCACAATTGGATTCTGAAGTTGAACCTTCTTCCCCTGTTCCTAACCATGATAACGATCCTCAACCCTCAGATCTCAATCACCTGGCCCAGGCTGATGATGATGCACTTGGTGGGGAGCTCCAGAACAAGCTGGATTTGAAGGATGGAGATGAAACTGAGAATAAAGATTCAAACTTTGAAGCTGATGGTGGACAATTGTGTGATGAAGCTGCTGCCCCAGAATCTGATAAGGGCCAAGTGTGTGATGATGATGATGATGATAATAATGATTATGATGGTTGGAATGGTGGTGATGAGGGCTGTGATTGGATTGAGGATGTGAATGGGAGAGTGAGTGAGAGTGATAAGGTGGATGGAGATTTTGATGAAGTGGATGGTGGTGAAGTGGAGAACAAGGATGACATTAGCAATGGTGGAGCTCAAAAGTACCCGTTGAGGCCTGATGCTGAAGACTGTGCATTTTATCTCAAGACTGGGACTTGCAAATTTGGATTCAATTGCAAGTTTAATCACCCGATTAGGTGGAAAAACCAGGCTGTTAAAGAGAAGGAAGGAGAAAGGGATGAACCGGCTGAAAGATCAGGCCAGACAGAATGCAAGTATTATTTAAGGTCTGGGGGTTGCAAGTTTGGAAAAGCTTGTAAGTTTAACCACACAAGAGGAAAGTGTTTAGCAGCCCCAATTTTAGAGCTTAACTTCCTCGGCCTTCCTATTCGTTTGGGAGAGAAAGAGTGCCTCTATTACATGCGCACTGGCTCTTGTAAGTTTGGAGCAAACTGCAAGTATAATCATCCGGATCCTACAGCTGTTGGAGGATTTGATTCTTCTTCAGGGTATGATACTGGTAGTTCTATTTCATTACAAGGTGTATCACAATCATCCATGCCCTTGTGGTCTTCTACTAGAACATCAAATGAAAGTGCTTCTTTTGTGTCAATGATACTTTCGCCTACTCAAGGGGTTTCTCCCCATAGTTCTGAATGGAATGGATATCAGGCACCTGTCTATCTATCTGAGAGGGGTATGCATCCACCTTCAGCATATGTCATGAACAACCCAGCTATTGAAACAAATGTCTATATGCATCATCAAAAGCTGACCCCAGTTGAAGAGTTTCCAGAGAGGCCTGGCGAGCCAGAATGCAGCTTCTTCTTAAAAACTGGGGATTGCAAGTTTAAATCTAATTGTAAATATCACCATCCAAAGAATCGGGCAAGATTACCTCCATGCAACCTCAGTGACAAGGGTCTTCCTTTGAGACCGGACCAGAATGTGTGCACGCATTACAGCCGTTATGGTATTTGCAAATTTGGACCAGCTTGTAGGTTTGACCACCCTATAAACTCATCACCCACGTCTATGCCTGAACTTGATCAACAATTCTCCTACCCAAACTCATCTAGTGTTGAGGTGGCTGGGATGGTGGGTGGAAGTGACGGTGCCAGCGGTGCAACGATTCAGCAACCTGTGTTGTAA 1521 0.4431 MESSESESVGFSSKDPQLDSEVEPSSPVPNHDNDPQPSDLNHLAQADDDALGGELQNKLDLKDGDETENKDSNFEADGGQLCDEAAAPESDKGQVCDDDDDDNNDYDGWNGGDEGCDWIEDVNGRVSESDKVDGDFDEVDGGEVENKDDISNGGAQKYPLRPDAEDCAFYLKTGTCKFGFNCKFNHPIRWKNQAVKEKEGERDEPAERSGQTECKYYLRSGGCKFGKACKFNHTRGKCLAAPILELNFLGLPIRLGEKECLYYMRTGSCKFGANCKYNHPDPTAVGGFDSSSGYDTGSSISLQGVSQSSMPLWSSTRTSNESASFVSMILSPTQGVSPHSSEWNGYQAPVYLSERGMHPPSAYVMNNPAIETNVYMHHQKLTPVEEFPERPGEPECSFFLKTGDCKFKSNCKYHHPKNRARLPPCNLSDKGLPLRPDQNVCTHYSRYGICKFGPACRFDHPINSSPTSMPELDQQFSYPNSSSVEVAGMVGGSDGASGATIQQPVL 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2115g00010 506 MobiDBLite consensus disorder prediction 118 132 - -
Gabi2115g00010 506 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 211 233 IPR000571 GO:0046872
Gabi2115g00010 506 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 165 187 IPR000571 GO:0046872
Gabi2115g00010 506 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 257 280 IPR000571 GO:0046872
Gabi2115g00010 506 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 392 417 IPR000571 GO:0046872
Gabi2115g00010 506 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 438 461 IPR000571 GO:0046872
Gabi2115g00010 506 ProSiteProfiles Zinc finger C3H1-type profile. 390 418 IPR000571 GO:0046872
Gabi2115g00010 506 SUPERFAMILY CCCH zinc finger 433 461 IPR036855 GO:0046872
Gabi2115g00010 506 SUPERFAMILY CCCH zinc finger 212 236 IPR036855 GO:0046872
Gabi2115g00010 506 PANTHER PROTEIN PHOSPHATASE RELATED 21 472 - -
Gabi2115g00010 506 MobiDBLite consensus disorder prediction 487 506 - -
Gabi2115g00010 506 MobiDBLite consensus disorder prediction 1 157 - -
Gabi2115g00010 506 ProSiteProfiles Zinc finger C3H1-type profile. 254 282 IPR000571 GO:0046872
Gabi2115g00010 506 MobiDBLite consensus disorder prediction 94 108 - -
Gabi2115g00010 506 ProSiteProfiles Zinc finger C3H1-type profile. 161 189 IPR000571 GO:0046872
Gabi2115g00010 506 SUPERFAMILY CCCH zinc finger 395 421 IPR036855 GO:0046872
Gabi2115g00010 506 SUPERFAMILY CCCH zinc finger 162 188 IPR036855 GO:0046872
Gabi2115g00010 506 Gene3D - 435 483 - -
Gabi2115g00010 506 SUPERFAMILY CCCH zinc finger 255 281 IPR036855 GO:0046872
Gabi2115g00010 506 ProSiteProfiles Zinc finger C3H1-type profile. 208 236 IPR000571 GO:0046872
Gabi2115g00010 506 Gene3D - 382 432 - -
Gabi2115g00010 506 Gene3D - 199 284 - -
Gabi2115g00010 506 MobiDBLite consensus disorder prediction 53 73 - -
Gabi2115g00010 506 Gene3D - 138 198 - -
Gabi2115g00010 506 ProSiteProfiles Zinc finger C3H1-type profile. 435 463 IPR000571 GO:0046872
Gabi2115g00010 506 SMART c3hfinal6 435 462 IPR000571 GO:0046872
Gabi2115g00010 506 SMART c3hfinal6 254 281 IPR000571 GO:0046872
Gabi2115g00010 506 SMART c3hfinal6 390 417 IPR000571 GO:0046872
Gabi2115g00010 506 SMART c3hfinal6 161 188 IPR000571 GO:0046872
Gabi2115g00010 506 SMART c3hfinal6 208 235 IPR000571 GO:0046872
Gabi2115g00010 506 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2115g00010 Gabi-Chr2115 130311 136764 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2115g00010 158 497 C2H2 Transcription Factor Family AT3G02830 40.833 2.89e-77 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gabi2115g00010 zf-CCCH 4e-08 CL0537