Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2115g00009 ATGACAGGTTCAGAGGGAAACGGTGACGTTTTTCCATGGCTGAAATCGATGCCTCTGGCGCCGGAGTACAGGCCAAGCGTGGCGGAGTTCCAAGATCCAATTGGTTACATTTTCAAGATCGAGAAGGAAGCTTCAAACTACGGCATCTGCAAAATCATTCCACCGTTTCCACCTTCTTCAAAGAAAACCGCCATCGCCAACCTGAACCGCTCACTTCCGAACCCTACATTCACCACTCGCCAGCAGCAGATCGGCTTCTGTCCCCGGAAACCCCGTCCGGTTCAGCGTCCGGTTTGGCAGAGTGGGGACCACTACACCTTTCAGGAATTCGAAGCCAAAGCCAAATCCTTCGAGAAAACTTACCTCAAGCTCAAGCGCCATAACAAGAAGGGACAGGGACAGGGACAGGGACAAGCACAAGGACCGCTTGAAACTGAGACACTCTTTTGGAAGGCCACCGTTGACAAACCCTTCTCCGTTGAGTATGCTAACGACATGCCGGGTTCCGCCTTCGCCGCCGCGAAATGTAGGGACTCAGGGGATCCCCCTGCGACTCTTGCTGACACTGCTTGGAACATGAGAGGGGTTTCTAGGGCCAATGGTTCTCTCTTGAGGTTCATGAAGGAGGAGATTCCTGGTGTCACTTCCCCTATGGTTTATGTTGCCATGTTGTTCAGCTGGTTCGCTTGGCATGTCGAGGATCATGACTTGCACAGCTTGAATTACCTCCATATGGGTGCTGGCAAGACCTGGTATGGTGTGCCCCGTGATGCCGCCGTTGCGTTTGAGGAGGTTGTTAGGGTTCATGGCTATGGTGGAGAGATAAACCCTCTTGTGACATTTGCTATTCTTGGTGAGAAAAACACGGTGATGTCGCCCGAAGTATTTATTAGTGCAGGTGTTCCATGTTGCAGGTTAGTGCAAAATGCTGGGGAATTTGTTGTGACATTTCCAAGAGCCTATCACACAGGGTTTAGTCATGGTTTTAATTGTGGAGAGGCAGCTAACATTGCAACACCTGAGTGGTTGAATGTTGCTAAAGATGCTGCTATTCGGAGGGCTTCAATAAATTATCCTCCCATGGTTTCACATTTCCAGTTACTTTATGACCTTGCCTTAGCTTTGTGTTCTAGAATCCCTGGGGGCATAAGTGCTGAACCACGGAGTTCTCGTCTTAAAGATAAGAAGAAGGGTGAAGGAGAAACTGTAATCAAAGAACTATTTGTACAGGATGTTTTACAAAACAATGATCTGCTTTATGAACTTGGGAAAGGATCTGCTATAGTACTTCTTCCTCGTAGCTCAGTTGACATTTCTGTTTGCTCAAAATTACGTGTTGGATCCCAACAACTAAAAGTGAACCCTGGGTTTTCCCTCAATTTATGCAATTCAAAGGGAATAAATTCCTCAAAAGGTTTTGTTTCTGATGATCTGGTGTTCAACAGGAATCATGGAATCAAGCAAGAAAAATGTTTCTATTCTATGAAAGACAAATTTACTACATTGTGTGAAAGGAACAGGATTTCCTCATTCAATGCAAATGGTAACATATGCACTTCAAGTTCTAAGCCACTGCAAAGAGATATTGAAAGAGAAATTAGTCAAGGAGATGGGTTGTCAGATCAGAGACTGTTTTCATGTGTCACATGTGGAATATTGAGCTTTTCCTGTGTTGCTATTGTACAGCCTAGAGAACCAGCAGCTAGATATCTTATGTCAGCTGATTGTAGCTTCTTTAATGATTGGATTGTTGGTTCTGGAGTATCTAGCAATAAATTTACTATTTCCCATCAAGATGCTACTGTTCCTGATCCAAATATGTATACAGGGTGGATGAAAAAGAATGACCAAGATGGTTTATATGATGCTCTAGTTCAATCTGCTCAATACCGGAAACAAACTGCAAATCGAAATTATGAGGAGGCTTTAAATACTGAAAAAGAAAAAGGCAATACTGCTCTGGCATTATTGGCTTCAGCATATGGAAATTCTTCAGACTCTGAGGATGATCAGGGTGACCCAGATATTGCAATTGACGGTCATGAATCAAATGTGATAAACTCTAAATCAGGAAAACTACCTTCTAATTTTCAAGATTTTCATGCTAGTTCCGTGACTAAAATTGACATGGGAGATGATGTTCCTTCAAAGAGTGCCAATCATGAAGATTATATGCATCACAGATTTGAGTGTAATTTGAGTCATCAGTCTTTTGATCACACTTTTGAGAAACAGGATTGTGATATTATTTCAGGGTTTACATTTAAAAATATGAGGGAAGTGCTGAATTCCACCTCTAATTGTTCCCAAGATGCTCATGATTCTGAAAAGTCATTGTCAGTCAAGGCTATGGTTCCCGTTGATAAGAAAAATGCTTCATTGGTGCCACAATCTGATGAAGACTCATCTAGAATGCATGTATTCTGTCTAGAGCATGCTGCAGAAGCAGAGAAGCAACTTCGTCCAATAGGTGGAGCCCACATATTGCTCCTATGTCATCCAGATTATCCCAAGATAGAGGCTGAAGCAAAGTTTGTGGCAGAAGATTTGGGGATTGGTTACATGTGGAAGAATATTGCATACAAGCATGCCACCAAAGAGGATGAGGAGATGATCCAGTCAGCTCTGGATAGCGAGGAAGCTATTCCTGGGAATGGGGACTGGGCTGTAAAGCTAGGAATCAATCTCTTTTACAGTGCAAATCTTAGCCGCTCTCCTCTTTATAGTAAGCAGATGCCTTACAATTCTGTTATATATTATGTATTTGGGCGTAACTCTCCAGCAAGCTCACCCATACAACCAAAGGTCTATCAGAGAAGAGCCAACAGGCAGAAAAAGGTAGTTGCTGGGAAATGGTGTGGAAAAGTTTGGATGTCCAATCAGGTCCATCCCCTCTTAGCAAAAAGAGATTCTGAAGATGTTGAGGATGAGAAAAGCTTATATGGGTGGATATTACCTGATGAGAAAATTGAGAGATCGGAAAGTACCCACAAAGGCGAAACTAGTATCAGAAAATCAGGCAGGAAAAGGAAAATGACTGTAGAAAGTGGACGAACCAGGAAAGGCAGTTTTGTCGAGAGAGATGTGTTTTCGGATAATTCCACTGAAGATAAACCCAACCCTCAGCCAAGGAGGATTCTTAGAAATAAGCAAGCCAAGCATATTGAGAGAGATGGTGCAGCTTTGGTTGGAGATTATTCTCCTCCATATCATCATAGAAAACCTATAAGCAAGCAAACAAATTGCACTGAAAGTGATGCAGTTTCTGATGATTCACATGATGATAATTATCATATGCGGCGCAGGAGGAATGTTAATGTCAAAAAAGCTAAATTTATTTACAATGATGTGGTTTCAGGTGATACAGTGAACTATGATTCCGATTGGCAGCAGAGGGGAGAACTTAGCAGCAAGGAAGTTGAAGACACAGAGAGAGATGCAATTTCAGAGGATTCTTTGGATGTTGGTTCTCCTCAGCTGCATAGGAAGACTTCTCAAAGCAAGCATGCCAAATACATTGAAGAAGATGTGATTTCTGATGACCAAATGGAGAATCCTTTTCAGAAGCAGCAAAGGAGAATTCCTAAAAGCAGGCAAGGCAAATCCCTTGCTGAAAAGGATATAATGATATCTGATGATAACCTGGAGCTGAACATCCAGAAGAAGCAGCAGAGGAATCCTAAAAGCAGGCAAGCCAAATGCCTTACTGGAGAGGACATTATATCAGACGACCAACTGGAGGGCCATTATCGCAAGTATCGAAGAAGGACTCCTAAAGGCACGCAAGCCAACTGCGAAGCAGGGGAAGATGTAATGTCTGACAACCAATTGGAGGATTGCTTTCAGAAGCAGGTAACAAGTTTTTCTAGGACAAGGCAAAATAAAGGCATTGATAGAGAAGTTAAAAATGTAATCCAATTGGAGGATCACTTTCAGAAGCAGCAGAGAAGATTTCCCAGGAGCAGGCAAAACAAACGCATTGATAGAGAAGTTATGGATGACTCGGCTGAAAGTATTTCTCATCTGCTGCATAGAACTCCTAAAACGAAGCAAGCTAAATGCATGAACGAAGATGATATGCATTCAGATGATGAAATGGAAGATGATTCTCTTCAGCAGCACAGGAGAACTCTTCGAAGTAAACAATCTAAACCAAAGACACTTAAAGAGATGAAACAAGCTAACCCTCCCCAAGTGAAAAACCAGACATTGCGGCCTGTAAAACGAGGGGCTCAGATCCAGATGAAATCAAAGGCTCCTCAGCAAATAAAGCAGCCTTCTCATTTACGGAATAAACAATCTGGTAACTCCAGAGAGTTATGTTTACATATGGATGTGGAGGAAGATGGTGGACCTAGCACACGCCTTAGGAAGAGAGTCCCAAAAGCTCAGGAGTCGGAAGGAAAATCAAAGGACAAGCAAACCAAAAGGAAAAAGGTGAAGAATGCTACAGCGGCAAAGGTTTCAGCTGGCCATGCCAAAATGAAGGATGAGGAAGCAGAATACCAGTGTGACATTGAGGGGTGCACCATGAGTTTTGGGTCAAAACAGGAGCTAGTGCATCATAAGAGAAATATCTGTCCTGTAAAAGGGTGTGGGAAGAAGTTTTTCTCACACAAATATCTGGTGCAGCACCGTCGAGTTCATGAGGATGACAGGCCCCTAAAGTGCCCTTGGAAGGGGTGCAAGATGACTTTCAAGTGGGCATGGGCTCGTACTGAACATATTCGAGTCCACACTGGTGCGCGTCCTTATGTCTGTGCTGAGCCAGGCTGTGGGCAAACATTCAGATTTGTGTCTGATTTCAGTCGTCATAAGCGAAAGACTGGTCATTCAACAAAGAAGACTCGTTAA 4854 0.4314 MTGSEGNGDVFPWLKSMPLAPEYRPSVAEFQDPIGYIFKIEKEASNYGICKIIPPFPPSSKKTAIANLNRSLPNPTFTTRQQQIGFCPRKPRPVQRPVWQSGDHYTFQEFEAKAKSFEKTYLKLKRHNKKGQGQGQGQAQGPLETETLFWKATVDKPFSVEYANDMPGSAFAAAKCRDSGDPPATLADTAWNMRGVSRANGSLLRFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRVHGYGGEINPLVTFAILGEKNTVMSPEVFISAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLNVAKDAAIRRASINYPPMVSHFQLLYDLALALCSRIPGGISAEPRSSRLKDKKKGEGETVIKELFVQDVLQNNDLLYELGKGSAIVLLPRSSVDISVCSKLRVGSQQLKVNPGFSLNLCNSKGINSSKGFVSDDLVFNRNHGIKQEKCFYSMKDKFTTLCERNRISSFNANGNICTSSSKPLQRDIEREISQGDGLSDQRLFSCVTCGILSFSCVAIVQPREPAARYLMSADCSFFNDWIVGSGVSSNKFTISHQDATVPDPNMYTGWMKKNDQDGLYDALVQSAQYRKQTANRNYEEALNTEKEKGNTALALLASAYGNSSDSEDDQGDPDIAIDGHESNVINSKSGKLPSNFQDFHASSVTKIDMGDDVPSKSANHEDYMHHRFECNLSHQSFDHTFEKQDCDIISGFTFKNMREVLNSTSNCSQDAHDSEKSLSVKAMVPVDKKNASLVPQSDEDSSRMHVFCLEHAAEAEKQLRPIGGAHILLLCHPDYPKIEAEAKFVAEDLGIGYMWKNIAYKHATKEDEEMIQSALDSEEAIPGNGDWAVKLGINLFYSANLSRSPLYSKQMPYNSVIYYVFGRNSPASSPIQPKVYQRRANRQKKVVAGKWCGKVWMSNQVHPLLAKRDSEDVEDEKSLYGWILPDEKIERSESTHKGETSIRKSGRKRKMTVESGRTRKGSFVERDVFSDNSTEDKPNPQPRRILRNKQAKHIERDGAALVGDYSPPYHHRKPISKQTNCTESDAVSDDSHDDNYHMRRRRNVNVKKAKFIYNDVVSGDTVNYDSDWQQRGELSSKEVEDTERDAISEDSLDVGSPQLHRKTSQSKHAKYIEEDVISDDQMENPFQKQQRRIPKSRQGKSLAEKDIMISDDNLELNIQKKQQRNPKSRQAKCLTGEDIISDDQLEGHYRKYRRRTPKGTQANCEAGEDVMSDNQLEDCFQKQVTSFSRTRQNKGIDREVKNVIQLEDHFQKQQRRFPRSRQNKRIDREVMDDSAESISHLLHRTPKTKQAKCMNEDDMHSDDEMEDDSLQQHRRTLRSKQSKPKTLKEMKQANPPQVKNQTLRPVKRGAQIQMKSKAPQQIKQPSHLRNKQSGNSRELCLHMDVEEDGGPSTRLRKRVPKAQESEGKSKDKQTKRKKVKNATAAKVSAGHAKMKDEEAEYQCDIEGCTMSFGSKQELVHHKRNICPVKGCGKKFFSHKYLVQHRRVHEDDRPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEPGCGQTFRFVSDFSRHKRKTGHSTKKTR 1617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2115g00009 1617 Gene3D Cupin 13 358 - -
Gabi2115g00009 1617 SUPERFAMILY beta-beta-alpha zinc fingers 1525 1561 IPR036236 -
Gabi2115g00009 1617 ProSiteProfiles JmjN domain profile. 20 61 IPR003349 -
Gabi2115g00009 1617 Coils Coil 625 645 - -
Gabi2115g00009 1617 ProSitePatterns Zinc finger C2H2 type domain signature. 1527 1549 IPR013087 -
Gabi2115g00009 1617 MobiDBLite consensus disorder prediction 1123 1168 - -
Gabi2115g00009 1617 FunFam Probable lysine-specific demethylase ELF6 1582 1611 - -
Gabi2115g00009 1617 MobiDBLite consensus disorder prediction 1132 1151 - -
Gabi2115g00009 1617 Gene3D Classic Zinc Finger 1523 1609 - -
Gabi2115g00009 1617 MobiDBLite consensus disorder prediction 1183 1203 - -
Gabi2115g00009 1617 MobiDBLite consensus disorder prediction 1394 1408 - -
Gabi2115g00009 1617 MobiDBLite consensus disorder prediction 1441 1473 - -
Gabi2115g00009 1617 MobiDBLite consensus disorder prediction 1312 1492 - -
Gabi2115g00009 1617 Pfam JmjC domain, hydroxylase 218 336 IPR003347 -
Gabi2115g00009 1617 PANTHER LYSINE-SPECIFIC DEMETHYLASE 12 1314 - -
Gabi2115g00009 1617 SMART c2h2final6 1555 1579 IPR013087 -
Gabi2115g00009 1617 SMART c2h2final6 1502 1524 IPR013087 -
Gabi2115g00009 1617 SMART c2h2final6 1585 1611 IPR013087 -
Gabi2115g00009 1617 SMART c2h2final6 1525 1549 IPR013087 -
Gabi2115g00009 1617 FunFam Probable lysine-specific demethylase ELF6 13 358 - -
Gabi2115g00009 1617 ProSiteProfiles Zinc finger C2H2 type domain profile. 1585 1616 IPR013087 -
Gabi2115g00009 1617 ProSitePatterns Zinc finger C2H2 type domain signature. 1587 1611 IPR013087 -
Gabi2115g00009 1617 SUPERFAMILY beta-beta-alpha zinc fingers 1565 1609 IPR036236 -
Gabi2115g00009 1617 SMART cupin_9 185 354 IPR003347 -
Gabi2115g00009 1617 MobiDBLite consensus disorder prediction 1312 1360 - -
Gabi2115g00009 1617 ProSiteProfiles JmjC domain profile. 188 354 IPR003347 -
Gabi2115g00009 1617 MobiDBLite consensus disorder prediction 992 1096 - -
Gabi2115g00009 1617 FunFam Probable lysine-specific demethylase ELF6 1552 1581 - -
Gabi2115g00009 1617 Pfam jmjN domain 21 54 IPR003349 -
Gabi2115g00009 1617 MobiDBLite consensus disorder prediction 662 693 - -
Gabi2115g00009 1617 MobiDBLite consensus disorder prediction 992 1060 - -
Gabi2115g00009 1617 ProSiteProfiles Zinc finger C2H2 type domain profile. 1525 1554 IPR013087 -
Gabi2115g00009 1617 SMART JmjN_1 19 60 IPR003349 -
Gabi2115g00009 1617 SUPERFAMILY Clavaminate synthase-like 101 368 - -
Gabi2115g00009 1617 ProSitePatterns Zinc finger C2H2 type domain signature. 1557 1579 IPR013087 -
Gabi2115g00009 1617 MobiDBLite consensus disorder prediction 1415 1438 - -
Gabi2115g00009 1617 ProSiteProfiles Zinc finger C2H2 type domain profile. 1555 1584 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2115g00009 Gabi-Chr2115 103630 113630 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2115g00009 804 905 C2H2 Transcription Factor Family AT5G04240 33.333 9.79e-15 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi2115g00009 JmjC 9.5e-36 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2115g00009 - - gmx:100775271 2495.31