Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2115g00002 ATGGCATCAAGCAAGGGGTTTCTGACCGATGGGCAGAGGGAAATACTGAAAATTGCGACTGAGAATTTGGAGAATTTGTCTTCGTCGCCGAAATCTCCGTCGTCTTTGCTTTCTGAGCATAATCATACCAAAGCTTCTTGGGGTGTCAAGCCTCAAACTGCTGCGGTTGCTGGCAGCAGGCATGTACGCCGGTCGAACTCGGGAAAGTTTGTGAGGGTAAAGAAAGACGGTGCTGGTGGTAAGGGCACGTGGGGAAAATTGCTTGATACTGATGGTTATTCGCATATAGACAGGAATGATCCTAACTACGACAGTGGCGAGGAACCTTATCAGTTGGTGGGATCTACCGTTACTGACCCATTAGATGAATTCAAGAAAGCCATAGTATCCATCATAGAGGAGTTCTTCAGTACTGGGGATGTGGACATGGCTGCATCTGACCTCAGAGAACTTGGCTCTAACGAATATTATCCATACATCATTAAACGTCTTGTATCCATGGCCATGGATAAGCATGATAAGGAGAAAGAAATGGCTTCAGTTCTGCTTTCAGCATTGTATGCTGATGTCATCAGTCCTGCACAGATTAGGGATGGATTTTTTATGCTTATTGAATCTGCTGATGATCTTGCAGTAGACATACTGGATGCAGTTGACATCCTTGCTTTGTTCCTAGCACGTGCTGTTGTTGATGACATCCTTCCTCCAGCCTTTCTTGTCAGGGCCAAGAAGGCTCTTCCAGAATCATCCAAGGGAGTTCAGGTAATCCAGACTGCTGAGAAGACTTATCTCTCAGCTCCACACCATGCAGAACTTGTGGAGAGGAGATGGGGTGGTAGCACTCAGGTAACTGTTGAAAATGTGAAGAAGAGGATTGCTGATTTACTAAGAGAATACGTGAGTAGCGGTGATACATTTGAAGCCTGTAGGTGTATACGTGAGTTAGGGGTTCCATTCTTCCATCATGAGATCGTGAAGAGGGCTCTGGTGCTTGCCATGGAGATCCATTCAGCGGAACCTCTAATGTTAAAGCTATTAAAAGAAGCAGCAGCAGAAGGACTCATTAGTTCCAGCCAAATGGTTAAAGGGTTTTCTCGTTTGGCAGAAGCCCTAGATGATCTTGCTCTTGATATTCCATCAGCTAAAACTTTGTTTCAGTCATTGATACGTGAGGCAATATTAGAAGGATGGCTTGATGATTCATTTATGAAACCCTCTGGTGAAGATGGGGATGTCCAAGTTCAAGATGAAAATTTGAGGAAGTACAAAAAAGAGGTGGTAACTATAATTCACGAATATTTTCTCTCTGATGACATTCCTGAACTCATTCGAAGTCTTGAAGATCTTGGGACACCTGAGTATAACCCAATATTTTTGAAGAAGCTAATAACAATTGCTATAGACAGAAAGAACAGGGAAAAGGAAATGGCATCTGTACTGCTAGCTGCTCTTCATATAGAAATCTTCTCAACAGAGGATATAATTAATGGTTTTTTCATGCTTCTGGAAAGTGCAGAAGATACAGCACTGGATATATTGAATGCTTCAAATGAACTTGCCCTTTTTTTAGCTCGAGCTGTGATTGATGATGTGTTGGCCCCTCTGCATTTGGTAGAAATTGGCAGCATGTTGCCCCCAAAATGCAGTGGGAGTGAAACTGTGCAGATGGCTCGTTCACTCGTTGCTGCTCGTCATGCTGGTGAGAGGCTATTGAGATGTTGGGGTGGTGGGACTGGATGGGCTGTGGAAGATGCTAAGGACAAGATCATGAAGCTGTTGGAGGAGTATGAGAGCGGAGGTGATGTGAGTGAAGCATGCCAGTGTATTCGTGACCTAGGAATGCCTTTCTTTAACCATGAGGTTGTGAAGAAAGCTTTGGTTATGGCCATGGAGAAGAAGAATGATAGGATGCTGGGTTTGCTGCAGGAATGCTTTAGTGAAGGTTTGATCACCATCAATCAGATGACTAAAGGGTTCACCCGAATCAAGGATAGTCTTGATGATCTTGCTCTGGACATTCCTAACGCAAAGGAGAAATTCGTCTTCTATGTGGAGCATGCCCTCAGGAAGGGCTGGCTCCTACCATCATATGATTCGAATGCTACAGATGTCTAA 2115 0.4411 MASSKGFLTDGQREILKIATENLENLSSSPKSPSSLLSEHNHTKASWGVKPQTAAVAGSRHVRRSNSGKFVRVKKDGAGGKGTWGKLLDTDGYSHIDRNDPNYDSGEEPYQLVGSTVTDPLDEFKKAIVSIIEEFFSTGDVDMAASDLRELGSNEYYPYIIKRLVSMAMDKHDKEKEMASVLLSALYADVISPAQIRDGFFMLIESADDLAVDILDAVDILALFLARAVVDDILPPAFLVRAKKALPESSKGVQVIQTAEKTYLSAPHHAELVERRWGGSTQVTVENVKKRIADLLREYVSSGDTFEACRCIRELGVPFFHHEIVKRALVLAMEIHSAEPLMLKLLKEAAAEGLISSSQMVKGFSRLAEALDDLALDIPSAKTLFQSLIREAILEGWLDDSFMKPSGEDGDVQVQDENLRKYKKEVVTIIHEYFLSDDIPELIRSLEDLGTPEYNPIFLKKLITIAIDRKNREKEMASVLLAALHIEIFSTEDIINGFFMLLESAEDTALDILNASNELALFLARAVIDDVLAPLHLVEIGSMLPPKCSGSETVQMARSLVAARHAGERLLRCWGGGTGWAVEDAKDKIMKLLEEYESGGDVSEACQCIRDLGMPFFNHEVVKKALVMAMEKKNDRMLGLLQECFSEGLITINQMTKGFTRIKDSLDDLALDIPNAKEKFVFYVEHALRKGWLLPSYDSNATDV 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2115g00002 704 SMART ma3_7 585 694 IPR003891 -
Gabi2115g00002 704 SMART ma3_7 288 399 IPR003891 -
Gabi2115g00002 704 SMART ma3_7 124 235 IPR003891 -
Gabi2115g00002 704 SMART ma3_7 422 533 IPR003891 -
Gabi2115g00002 704 FunFam programmed cell death protein 4 115 267 - -
Gabi2115g00002 704 Pfam MA3 domain 423 532 IPR003891 -
Gabi2115g00002 704 Pfam MA3 domain 586 693 IPR003891 -
Gabi2115g00002 704 Pfam MA3 domain 289 399 IPR003891 -
Gabi2115g00002 704 Pfam MA3 domain 124 235 IPR003891 -
Gabi2115g00002 704 ProSiteProfiles MI domain profile. 584 703 IPR003891 -
Gabi2115g00002 704 Gene3D - 116 264 - -
Gabi2115g00002 704 Gene3D - 412 564 - -
Gabi2115g00002 704 MobiDBLite consensus disorder prediction 25 48 - -
Gabi2115g00002 704 SUPERFAMILY ARM repeat 419 578 IPR016024 -
Gabi2115g00002 704 ProSiteProfiles MI domain profile. 421 542 IPR003891 -
Gabi2115g00002 704 SUPERFAMILY ARM repeat 284 404 IPR016024 -
Gabi2115g00002 704 ProSiteProfiles MI domain profile. 287 408 IPR003891 -
Gabi2115g00002 704 FunFam Programmed cell death protein 4 273 408 - -
Gabi2115g00002 704 SUPERFAMILY ARM repeat 581 700 IPR016024 -
Gabi2115g00002 704 Gene3D - 274 406 - -
Gabi2115g00002 704 Gene3D - 572 700 - -
Gabi2115g00002 704 PANTHER PROGRAMMED CELL DEATH 4 5 698 IPR039778 GO:0045892
Gabi2115g00002 704 SUPERFAMILY ARM repeat 121 281 IPR016024 -
Gabi2115g00002 704 FunFam Programmed cell death protein 4 570 703 - -
Gabi2115g00002 704 ProSiteProfiles MI domain profile. 123 244 IPR003891 -
Gabi2115g00002 704 FunFam programmed cell death protein 4 411 565 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2115g00002 Gabi-Chr2115 19081 24408 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2115g00002 588 680 Eukaryotic Initiation Factors Gene Family AT5G57870 32.292 1.71e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2115g00002 - - gmx:100815729 1173.69