Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2114g00006 ATGGCGGGGTTGTTCTCATTAGGTGGCGGTGGTGGCGGTGGAGGAGGGAGAGGGAGCAGCGGCGGCAACCAAGACAGCGAGATTCCTCCTCCGGAGACACTATTCTGGTACAGCAAGACCAACGAGGACGTTACATCGTACAGAGGTTTCGAGCTATGGAACCAACAACAACAACAGCAGCAGCAGCACGCGGAGCAGCTGATACCGCATGCGCGTCCACTCCTCCACCGAGATCTTTACTCTTCCGGCGGGGTGGGGCCCAGCCGGGTCTCCGATGATAACTCGTCGTCGAGATCGGCCTTCATGGCGATGCGTTCGGCCGTGGAAGGCGGAAGCGGCGGAAGCGGAGGAGGGATAAGCTGCCAAGACTGCGGTAACCAAGCGAAGAAAGATTGCCCTCACATGCGATGCAGGACTTGCTGCAAGAGCCGCGGCTACGAGTGCCAAACCCACTTGAAGAGCACGTGGGTTCCAGCCTCAAAACGCCGTGAGCGACAGCATCACCTCGCCACTTTGCAAGAGCAACAACAACACCATAGAGACATTTCTAAAAGACCCAGAGATAGTAACCCATCTTCTTCTTCCGCTCTTGCTTGCACTCGTTTGCCCTCAGGGTTAGAGCAAGGGCATTTTCCTGCAGTGGTGAGTTCTCCAGCTGAATTCAGGTGTGTGAGGGTTAGCGCCGTGGACGATGCTGATGACAGTTACGCATATCAAACGGCTGTGAACATCGGAGGGCATGTCTTCAAAGGAATCCTCTATGACTATGGTCCCGAAAGTAGTAATAATAATATTACTAATTACATGGCTGGTGAGTCCTCTTCCGCCGCCGCCGCCGTTGCCGGAGCTCAGCCCTTCAACATAATCACCGCCACCGCAACCGCCTCTGCCGTTGTCTCCTCTTCTGGGGCACTCGTTGATCCTTCTTCTTTGTATCCAGCTCCAATTAACCCCTTCATGGCCGTTAGTGGTACGCAATTCTTCCCTCACACAAGATCTTGA 1002 0.5479 MAGLFSLGGGGGGGGGRGSSGGNQDSEIPPPETLFWYSKTNEDVTSYRGFELWNQQQQQQQQHAEQLIPHARPLLHRDLYSSGGVGPSRVSDDNSSSRSAFMAMRSAVEGGSGGSGGGISCQDCGNQAKKDCPHMRCRTCCKSRGYECQTHLKSTWVPASKRRERQHHLATLQEQQQHHRDISKRPRDSNPSSSSALACTRLPSGLEQGHFPAVVSSPAEFRCVRVSAVDDADDSYAYQTAVNIGGHVFKGILYDYGPESSNNNITNYMAGESSSAAAAVAGAQPFNIITATATASAVVSSSGALVDPSSLYPAPINPFMAVSGTQFFPHTRS 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2114g00006 333 MobiDBLite consensus disorder prediction 159 187 - -
Gabi2114g00006 333 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 19 317 IPR007818 GO:0003700|GO:0006355
Gabi2114g00006 333 MobiDBLite consensus disorder prediction 1 33 - -
Gabi2114g00006 333 MobiDBLite consensus disorder prediction 159 198 - -
Gabi2114g00006 333 NCBIfam putative zinc finger domain, LRP1 type 120 162 IPR006510 -
Gabi2114g00006 333 Pfam Domain of unknown function (DUF702) 118 259 - -
Gabi2114g00006 333 NCBIfam LRP1 C-terminal domain 210 258 IPR006511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2114g00006 Gabi-Chr2114 165075 166742 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2114g00006 1 333 C2H2 Transcription Factor Family AT3G51060 47.135 9.88e-84 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Gabi2114g00006 DUF702 8.1e-64 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2114g00006 - - gmx:100781981 380.948