Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi210g00003 ATGGACGAAGATTTCGACTTACCGGCGGCGGAGCCTATGAGTGAGGACTTCGACTTCGCCGGCGGCGGCGACGACAACCCGATTATCAAGGTCGGGGAGGAGAAAGAGATTGGGAAGCAGGGATTGAAGAAGAAGCTTCTCAAGGAGGGTGAAGGATGGGACACTCCTGAAGTGGGTGATGAAGTTCAAGTTCACTATACTGGGACATTGCTTGATGGCACCAAGTTTGATTCCAGCAGAGATAGGGGAACCCCTTTCAAGTTCACGCTTGGGCAAGGGCAAGTTATTAAAGGATGGGATGAAGGTATTAGAACCATGAAGAAAGGTGAAAATGCCATTTTCACCATCCCACCTGAGCTAGCTTATGGTGAATCTGGTTCTCCTCCAACTATTCCTCCCAACGCGACTCTCCAATTTGATGTTGAGCTTCTGTCTTGGACTAGTGTGAAGGACATATGTAAGGATGGAGGTTTATTTAAGAAGATACTTACTGAGGGGGAGAAATGGGAGAATCCCAAGGATCCTGATGAAGTCTTAGTTAAGTATGAAGCACGTCTTGATGATGGAACACTTGTAACGAAATCTGATGGAGTGGAGTTCACAGTTAAAGAAGGTCATTTTTGTCCTGCTTTGTCAAAGGCTGTTAAAACCATGAAGAAGGGAGAAAAAGTTATTTTGACTGTGAAGCCACAATATGGATTTGGTGAGAAGGGTAAACCAGCGCATGGTGACGAAGGTGTAGTTCCACCAAATGCAACACTGCAGATTACTCTCGAGTTAGTTTCTTGGAAGACTGTGTCAGAAGTAACTGATGACAAGAAGGTCATTAAAAAGATCCTTAAGGAAGGGGAAGGATATGAGCGTCCAAATGAGGGAGCCATTGTGAAATTGAAACTAATTGGTAAGCTGCAAGATGGTACTCTCTTTTTGAAGAAGGGCCATGATGATGGAGGGCAGCTGTTTGAATTCAAAACAGATGAAGAGCAAGTAATTGACGGGCTTGACAGAGCTGTGTTGAACATGAAGAAGGGTGAGGTTGCACTGTTGACTATTGCACCTGAGTATGCTTTTGGCTTGTCAGAGTCCCAGCAGGAATTGGCAATGGTTCCTCCTAACTCCACTGTGTATTATGAGGTTGAGCTAGTATCATTTGAGAAGGAAAAGGAGTCCTGGGACATGAACACTGAAGAGAAGATTGAAGCTGCAGGTAAGAAGAAAGAAGAAGGGAATGCATTGTTTAAAGCTGGTAAATATGCAAGAGCTTCTAAAAGATATGAGAAGGCTATAAAGTTCGTAGAGTATGATACCTCCTTCAGCGAAGAGGAGAAGAAGAAAGCCAAGGCCTTGAAGGTTGCCTGCAATCTAAACGATGCAGCTTGCAAGTTGAAGTTAAAAGATTATAAACAAGCAGAGAAATTGTGTACTAAGGTGCTGGACCTTGAGAGCACAAATGTGAAGGCTCTCTATAGAAGGGCCCAAGCATATATCCATTTGGCTGACTTGGATTTGGCTGAATTTGATATCAAGAAAGCTCTTGAGATTGACCCTGACAACAGGGATGTCAAGCTGGAGTATAAGACTTTGAAGGAAAAAATGAAGGAGTATAATCGAAAGGAGGCTAAATTTTACGGAAATATGTTTAGCAAAATGAATAAACTTGATTCTATCGAAAGTAATAAACCGGTGGCCATGGATGCTCAACCGATGAATATCGACAGCAAGGCATAA 1728 0.4323 MDEDFDLPAAEPMSEDFDFAGGGDDNPIIKVGEEKEIGKQGLKKKLLKEGEGWDTPEVGDEVQVHYTGTLLDGTKFDSSRDRGTPFKFTLGQGQVIKGWDEGIRTMKKGENAIFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGLFKKILTEGEKWENPKDPDEVLVKYEARLDDGTLVTKSDGVEFTVKEGHFCPALSKAVKTMKKGEKVILTVKPQYGFGEKGKPAHGDEGVVPPNATLQITLELVSWKTVSEVTDDKKVIKKILKEGEGYERPNEGAIVKLKLIGKLQDGTLFLKKGHDDGGQLFEFKTDEEQVIDGLDRAVLNMKKGEVALLTIAPEYAFGLSESQQELAMVPPNSTVYYEVELVSFEKEKESWDMNTEEKIEAAGKKKEEGNALFKAGKYARASKRYEKAIKFVEYDTSFSEEEKKKAKALKVACNLNDAACKLKLKDYKQAEKLCTKVLDLESTNVKALYRRAQAYIHLADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNRKEAKFYGNMFSKMNKLDSIESNKPVAMDAQPMNIDSKA 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi210g00003 575 FunFam Peptidylprolyl isomerase 390 545 - -
Gabi210g00003 575 Gene3D - 265 386 IPR046357 GO:0003755
Gabi210g00003 575 SUPERFAMILY TPR-like 390 551 IPR011990 GO:0005515
Gabi210g00003 575 SUPERFAMILY FKBP-like 37 151 - -
Gabi210g00003 575 Gene3D - 151 264 IPR046357 GO:0003755
Gabi210g00003 575 SUPERFAMILY FKBP-like 151 267 - -
Gabi210g00003 575 SMART tpr_5 485 518 IPR019734 GO:0005515
Gabi210g00003 575 SMART tpr_5 451 484 IPR019734 GO:0005515
Gabi210g00003 575 SMART tpr_5 402 435 IPR019734 GO:0005515
Gabi210g00003 575 Coils Coil 518 538 - -
Gabi210g00003 575 FunFam Peptidylprolyl isomerase 32 150 - -
Gabi210g00003 575 MobiDBLite consensus disorder prediction 1 26 - -
Gabi210g00003 575 FunFam Peptidylprolyl isomerase 265 387 - -
Gabi210g00003 575 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 292 385 IPR001179 GO:0003755
Gabi210g00003 575 Gene3D - 31 150 IPR046357 GO:0003755
Gabi210g00003 575 ProSiteProfiles TPR repeat profile. 485 518 IPR019734 GO:0005515
Gabi210g00003 575 FunFam Peptidylprolyl isomerase 151 264 - -
Gabi210g00003 575 PANTHER PEPTIDYLPROLYL ISOMERASE 34 148 - -
Gabi210g00003 575 SUPERFAMILY FKBP-like 269 402 - -
Gabi210g00003 575 Pfam Tetratricopeptide repeat 485 518 IPR001440 GO:0005515
Gabi210g00003 575 Gene3D Tetratricopeptide repeat domain 388 545 IPR011990 GO:0005515
Gabi210g00003 575 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 55 144 IPR001179 GO:0003755
Gabi210g00003 575 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 286 382 IPR001179 GO:0003755
Gabi210g00003 575 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 170 261 IPR001179 GO:0003755
Gabi210g00003 575 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 175 264 IPR001179 GO:0003755
Gabi210g00003 575 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 59 147 IPR001179 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi210g00003 Gabi-Chr210 20539 26256 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi210g00003 28 559 Calmodulin-binding Proteins AT3G25230 82.895 0.0 900
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi210g00003 K09571 - gmx:100803189 1005.74