Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2109g00012 ATGGGAAACAACTGTGTTGGATCGAGAACAACCTCTTCAAAGGATGGAGCTACTTTTCAAAGTTCATTCTGGTGGTCAAGGAAAACGAAGAAAGAGGTTTCTCATGCACATAGAGGTGTAACTGTGAGCAAAAGTTCAAATGCTATAGATTCTGTTCAACACAAGCCTCCGCAGGTAGTGAGAATTGACAAGGAGGATGTGAAGTCACCTCAACCCATGGAGACAAAATCATCTTCAGAACCAACAACTACACGAAAGGAAGAAGAGGTTAGGGCAAAGAGGCCCCACAATGTGAAGAGGCTAACAAGTGCAGGGCTTAAAGCAGATTCTGTTCTGCAGAGAAAAACTGGTAATCTTAAGGAGTTTTATAGTTTGGGGAAGAAGCTTGGACAAGGGCAATTTGGAATTACGTTCCTTTGTGTGGAGAAAGCCACTGGGAAAGAGTATGCTTGCAAGTCCATCTTGAAGAGAAAACTGCTGACAGATGAAGATGTGGAGGATGTGAGGAGGGAGATTCAGATAATGCATCACTTGGTAGGGAGTCCCAATGTGATATCGATTAAAGAGGCTTATGAGGATGCTGTTTCTGTTCATGTTGTTATGGAATTGTGTGCAGGGGGTGAACTATTTGATAGGATTGTGGAAAGAGGGCATTACACAGAAAGAAAAGCAGCTAAACTTTCAAGGACTATAGTTGGTGTTATTGAGTCTTGCCACTCCCTTGGAGTAATGCATCGTGATCTTAAGCCTGAGAATTTTCTATTTGTCAATGAGCAGGAAGATTCCCCCCTTAAGGCAATAGATTTTGGACTCTCTGCTTTTTTCAAACCAGGTGACATTTTCAATGACGTGGTAGGAAGTCCTTATTATGTTGCACCTGAAGTTCTACGCAAGCGTTATGGTCAAGAATCAGATGTGTGGAGTGCTGGTGTTATCTTATACATTCTCTTATGTGGGGTGCCTCCATTTTGGGGTGAATCGGAGCAAGAGATATTTGAGGCAATTTTGCATAGTGATCTTGATTTCTCATCAGATCCCTGGCCTAAAATCTCTGAAACTGCAAAAGACTTGGTTAAGAAAATGCTTGTCAGAGATCCTAGTAAACGAATAACAGCTTATGAAGTTCTTCGTCACCCTTGGATTCAGGTTGATGGAGCAGCTCCAGACAAGCCTCTTGATTCTGCAGTTTTGAGTCGCCTGAAGCAGTTTTCTGCAATGAACAAGCTCAAGAAAATGGCTCTTAGAGTTATTGCGGAGAATCTCTCTGAAGAAGAAATTGCTGGATTGAAAGAAATGTTTAAGACAATTGACACAGACAATAGTGGTCAAATTACTTTTGAAGAACTCAAGGTTGGAATGAAAAGATTTGGTGCTAATCTCAGTGAATCTGAAATTTATGATCTAATGCAAGCTGCAGATGTTGATAACAGTGGCACAATTGACTATGGAGAATTCATAGCAGCAACATTGCATTTAAACAAAGTTGATAGGGAAGATCATTTAGTTGCAGCTTTCTCATATTTTGATAAAGATGGAAGCGGCTACATCACTCAAGATGAGCTTCAACAAGCTTGTGAAGAATTTGGCATAGAGGATGTTCGCTTGGAGGAAATGATGCGAGAAGCTGATCAAGATAATGATGGAAGAATAGACTACAATGAATTTGTGGCTATGATGCAAAGAGGCAATGCAGATTTGGGTAAGAGGGGTCGAAAGGCTAGCAGTAGTTTTAGACTTGGGTTTAGGGAGGCACTACCGGTATGTTAA 1767 0.4114 MGNNCVGSRTTSSKDGATFQSSFWWSRKTKKEVSHAHRGVTVSKSSNAIDSVQHKPPQVVRIDKEDVKSPQPMETKSSSEPTTTRKEEEVRAKRPHNVKRLTSAGLKADSVLQRKTGNLKEFYSLGKKLGQGQFGITFLCVEKATGKEYACKSILKRKLLTDEDVEDVRREIQIMHHLVGSPNVISIKEAYEDAVSVHVVMELCAGGELFDRIVERGHYTERKAAKLSRTIVGVIESCHSLGVMHRDLKPENFLFVNEQEDSPLKAIDFGLSAFFKPGDIFNDVVGSPYYVAPEVLRKRYGQESDVWSAGVILYILLCGVPPFWGESEQEIFEAILHSDLDFSSDPWPKISETAKDLVKKMLVRDPSKRITAYEVLRHPWIQVDGAAPDKPLDSAVLSRLKQFSAMNKLKKMALRVIAENLSEEEIAGLKEMFKTIDTDNSGQITFEELKVGMKRFGANLSESEIYDLMQAADVDNSGTIDYGEFIAATLHLNKVDREDHLVAAFSYFDKDGSGYITQDELQQACEEFGIEDVRLEEMMREADQDNDGRIDYNEFVAMMQRGNADLGKRGRKASSSFRLGFREALPVC 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2109g00012 588 MobiDBLite consensus disorder prediction 34 95 - -
Gabi2109g00012 588 ProSitePatterns Protein kinases ATP-binding region signature. 129 156 IPR017441 GO:0005524
Gabi2109g00012 588 MobiDBLite consensus disorder prediction 80 95 - -
Gabi2109g00012 588 ProSiteProfiles Protein kinase domain profile. 123 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2109g00012 588 CDD STKc_CAMK 122 380 - -
Gabi2109g00012 588 ProSitePatterns EF-hand calcium-binding domain. 543 555 IPR018247 -
Gabi2109g00012 588 ProSiteProfiles EF-hand calcium-binding domain profile. 534 565 IPR002048 GO:0005509
Gabi2109g00012 588 CDD EFh 429 488 IPR002048 GO:0005509
Gabi2109g00012 588 ProSiteProfiles EF-hand calcium-binding domain profile. 424 459 IPR002048 GO:0005509
Gabi2109g00012 588 ProSitePatterns EF-hand calcium-binding domain. 437 449 IPR018247 -
Gabi2109g00012 588 MobiDBLite consensus disorder prediction 1 21 - -
Gabi2109g00012 588 SMART serkin_6 123 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2109g00012 588 FunFam Calcium-dependent protein kinase 1 125 208 - -
Gabi2109g00012 588 PANTHER SERINE/THREONINE-PROTEIN KINASE 112 555 - -
Gabi2109g00012 588 MobiDBLite consensus disorder prediction 57 71 - -
Gabi2109g00012 588 SUPERFAMILY EF-hand 420 561 IPR011992 -
Gabi2109g00012 588 Gene3D Transferase(Phosphotransferase) domain 1 209 405 - -
Gabi2109g00012 588 Pfam Protein kinase domain 123 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2109g00012 588 ProSitePatterns EF-hand calcium-binding domain. 473 485 IPR018247 -
Gabi2109g00012 588 Pfam EF-hand domain pair 429 489 IPR002048 GO:0005509
Gabi2109g00012 588 Pfam EF-hand domain pair 500 560 IPR002048 GO:0005509
Gabi2109g00012 588 CDD EFh 500 560 IPR002048 GO:0005509
Gabi2109g00012 588 FunFam Calcium-dependent protein kinase 1 389 563 - -
Gabi2109g00012 588 SUPERFAMILY Protein kinase-like (PK-like) 122 382 IPR011009 -
Gabi2109g00012 588 SMART efh_1 428 456 IPR002048 GO:0005509
Gabi2109g00012 588 SMART efh_1 534 562 IPR002048 GO:0005509
Gabi2109g00012 588 SMART efh_1 500 528 IPR002048 GO:0005509
Gabi2109g00012 588 SMART efh_1 464 492 IPR002048 GO:0005509
Gabi2109g00012 588 ProSitePatterns Serine/Threonine protein kinases active-site signature. 243 255 IPR008271 GO:0004672|GO:0006468
Gabi2109g00012 588 ProSiteProfiles EF-hand calcium-binding domain profile. 460 495 IPR002048 GO:0005509
Gabi2109g00012 588 FunFam Calcium-dependent protein kinase SK5 209 393 - -
Gabi2109g00012 588 ProSiteProfiles EF-hand calcium-binding domain profile. 496 531 IPR002048 GO:0005509
Gabi2109g00012 588 Gene3D Phosphorylase Kinase; domain 1 125 208 - -
Gabi2109g00012 588 MobiDBLite consensus disorder prediction 39 53 - -
Gabi2109g00012 588 Gene3D - 406 565 - -
Gabi2109g00012 588 ProSitePatterns EF-hand calcium-binding domain. 509 521 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2109g00012 Gabi-Chr2109 274374 279552 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2109g00012 1 582 EF-hand Containing Proteins AT5G04870 68.567 0.0 845
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gabi2109g00012 Pkinase 4.5e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2109g00012 K13412 - gmx:100783079 1007.67