Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2109g00011 ATGAAATCTGGACCGTCCAATCCTATTGTCCCATCAGATTCTGTTCTGCAGAGAAAAACTGGTAATCTTAAGGAGTTTTATAGTTTGGGGAAGAAGCTTGGACAAGGGCAATTTGGAATTACGTTCCTTTGTGTGGAGAAAGCCACTGGGAAAGAGTATGCTTGCAAGTCCATCTTGAAGAGAAAACTGCTGACAGATGAAGATGTGGAGGATGTGAGGAGGGAGATTCAGATAATGCATCACTTGGTAGGGAGTCCCAATGTGATATCGATTAAAGAGGCTTATGAGGATGCTGTTTCTGTTCATGTTGTTATGGAATTGTGTGCAGGGGGTGAACTATTTGATAGGATTGTGGAAAGAGGGCATTACACAGAAAGAAAAGCAGCTAAACTTTCAAGGACTATAGTTGGTGTTATTGAGTCTTGCCACTCCCTTGGAGTAATGCATCGTGATCTTAAGCCTGAGAATTTTCTATTTGTCAATGAGCAGGAAGATTCCCCCCTTAAGGCAATAGATTTTGGACTCTCTGCTTTTTTCAAACCAGGTGACATTTTCAATGACGTGGTAGGAAGTCCTTATTATGTTGCACCTGAAGTTCTACGCAAGCGTTATGGTCAAGAATCAGATGTGTGGAGTGCTGGTGTTATCTTATACATTCTCTTATGTGGGGTGCCTCCATTTTGGGGTGAATCGGAGCAAGAGATATTTGAGGCAATTTTGCATAGTGATCTTGATTTCTCATCAGATCCCTGGCCTAAAATCTCTGAAACTGCAAAAGACTTGGTTAAGAAAATGCTTGTCAGAGATCCTAGTAAACGAATAACAGCTTATGAAGTTCTTCGTCACCCTTGGATTCAGGTTGATGGAGCAGCTCCAGACAAGCCTCTTGATTCTGCAGTTTTGAGTCGCCTGAAGCAGTTTTCTGCAATGAACAAGCTCAAGAAAATGGCTCTTAGAGTTATTGCGGAGAATCTCTCTGAAGAAGAAATTGCTGGATTGAAAGAAATGTTTAAGACAATTGACACAGACAATAGTGGTCAAATTACTTTTGAAGAACTCAAGGTTGGAATGAAAAGATTTGGTGCTAATCTCAGTGAATCTGAAATTTATGATCTAATGCAAGCTGCAGATGTTGATAACAGTGGCACAATTGACTATGGAGAATTCATAGCAGCAACATTGCATTTAAACAAAGTTGATAGGGAAGATCATTTAGTTGCAGCTTTCTCATATTTTGATAAAGATGGAAGCGGCTACATCACTCAAGATGAGCTTCAACAAGCTTGTGAAGAATTTGGCATAGAGGATGTTCGCTTGGAGGAAATGATGCGAGAAGCTGATCAAGATAATGATGGAAGAATAGACTACAATGAATTTGTGGCTATGATGCAAAGAGGCAATGCAGATTTGGGTAAGAGGGGTCGAAAGGCTAGCAGTAGTTTTAGACTTGGGTTTAGGGAGGCACTACCGGTATGTTAA 1479 0.4064 MKSGPSNPIVPSDSVLQRKTGNLKEFYSLGKKLGQGQFGITFLCVEKATGKEYACKSILKRKLLTDEDVEDVRREIQIMHHLVGSPNVISIKEAYEDAVSVHVVMELCAGGELFDRIVERGHYTERKAAKLSRTIVGVIESCHSLGVMHRDLKPENFLFVNEQEDSPLKAIDFGLSAFFKPGDIFNDVVGSPYYVAPEVLRKRYGQESDVWSAGVILYILLCGVPPFWGESEQEIFEAILHSDLDFSSDPWPKISETAKDLVKKMLVRDPSKRITAYEVLRHPWIQVDGAAPDKPLDSAVLSRLKQFSAMNKLKKMALRVIAENLSEEEIAGLKEMFKTIDTDNSGQITFEELKVGMKRFGANLSESEIYDLMQAADVDNSGTIDYGEFIAATLHLNKVDREDHLVAAFSYFDKDGSGYITQDELQQACEEFGIEDVRLEEMMREADQDNDGRIDYNEFVAMMQRGNADLGKRGRKASSSFRLGFREALPVC 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2109g00011 492 FunFam Calcium-dependent protein kinase 1 293 467 - -
Gabi2109g00011 492 SUPERFAMILY Protein kinase-like (PK-like) 26 286 IPR011009 -
Gabi2109g00011 492 CDD STKc_CAMK 26 284 - -
Gabi2109g00011 492 ProSitePatterns EF-hand calcium-binding domain. 341 353 IPR018247 -
Gabi2109g00011 492 CDD EFh 333 392 IPR002048 GO:0005509
Gabi2109g00011 492 ProSiteProfiles EF-hand calcium-binding domain profile. 400 435 IPR002048 GO:0005509
Gabi2109g00011 492 ProSiteProfiles EF-hand calcium-binding domain profile. 364 399 IPR002048 GO:0005509
Gabi2109g00011 492 FunFam Calcium-dependent protein kinase 1 29 112 - -
Gabi2109g00011 492 Gene3D - 310 469 - -
Gabi2109g00011 492 Gene3D Phosphorylase Kinase; domain 1 29 112 - -
Gabi2109g00011 492 SMART serkin_6 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2109g00011 492 FunFam Calcium-dependent protein kinase SK5 113 297 - -
Gabi2109g00011 492 ProSitePatterns Protein kinases ATP-binding region signature. 33 60 IPR017441 GO:0005524
Gabi2109g00011 492 Gene3D Transferase(Phosphotransferase) domain 1 113 309 - -
Gabi2109g00011 492 ProSitePatterns EF-hand calcium-binding domain. 377 389 IPR018247 -
Gabi2109g00011 492 ProSitePatterns Serine/Threonine protein kinases active-site signature. 147 159 IPR008271 GO:0004672|GO:0006468
Gabi2109g00011 492 Pfam EF-hand domain pair 333 393 IPR002048 GO:0005509
Gabi2109g00011 492 Pfam EF-hand domain pair 404 464 IPR002048 GO:0005509
Gabi2109g00011 492 ProSiteProfiles Protein kinase domain profile. 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2109g00011 492 CDD EFh 404 464 IPR002048 GO:0005509
Gabi2109g00011 492 PANTHER SERINE/THREONINE-PROTEIN KINASE 19 459 - -
Gabi2109g00011 492 Pfam Protein kinase domain 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2109g00011 492 ProSiteProfiles EF-hand calcium-binding domain profile. 328 363 IPR002048 GO:0005509
Gabi2109g00011 492 ProSitePatterns EF-hand calcium-binding domain. 413 425 IPR018247 -
Gabi2109g00011 492 ProSitePatterns EF-hand calcium-binding domain. 447 459 IPR018247 -
Gabi2109g00011 492 SMART efh_1 404 432 IPR002048 GO:0005509
Gabi2109g00011 492 SMART efh_1 332 360 IPR002048 GO:0005509
Gabi2109g00011 492 SMART efh_1 368 396 IPR002048 GO:0005509
Gabi2109g00011 492 SMART efh_1 438 466 IPR002048 GO:0005509
Gabi2109g00011 492 SUPERFAMILY EF-hand 324 465 IPR011992 -
Gabi2109g00011 492 ProSiteProfiles EF-hand calcium-binding domain profile. 438 469 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2109g00011 Gabi-Chr2109 273950 279552 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2109g00011 12 486 EF-hand Containing Proteins AT5G04870 80.632 0.0 813
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gabi2109g00011 Pkinase 2.9e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2109g00011 K13412 - gmx:100783079 890.182