Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2108g00010 ATGGAGGCTAATATGTCTAGTTTTTGTGGTCAAGAGATAGATGAGAGTAAAGTTACTTCTATTTGCTCAGAAAAGGTTTGCTTTACTGAAGAGGGTAGTAAGGAAGATAAACTGAAATCTGCTAAAGCTGAGATGGGTGAGGTGAAAGAAGAAAATGAAAGATTGAAGATGATGCTGGAGCAAGTTGAAAAGGATTACCACTCTCTTCAATTGTGTTTCTTTGACATCCTTCAGAGAGAAACTTCAAAGAAAAGTGTAAAAGATTCAGCTCCTTCCCATGATGAAGTGGAAGAACCTATGCTTGTGTCACTTTCTCTCGGAAGAAGTCCAAGGGAGCCAAAAAAGGATGCAATAATTGGTAACTCAAGCAAACCTAAAGAAAAAGAAGATTTGGAAGCCAACCTTACCCTTGGTTTGGACTCCAAAACTCTGTCATCAATGGAACTGGTATCTGATCTCAGCCCCATGAACAACTCAGAAGAACTAAAGGAAGCAGAAGCAGGTGGAACATGTTCAACAAACAAGTCAGCAAGGACTAAAGATGGTGATGACGAAATTTCAGAGCTAACACCCACCAAGAGAGCTAGAGTTTGTGTAAGAACTAGATGTGATACTCCCACGATGATTGATGGATGCCAGTGGAGGAAATATGGACAGAAGATAGCAAAAGGAAATCCATGTCCAAGGGCTTACTATCGTTGCACAGTTGCTCCAGCATGCCCAGTCAGGAAACAGGTGCAAAGATGTTCTGAGGACATGTCCATCTTAATCACAACATATGAAGGAACACACAACCACCCACTTCCAGTTTCAGCCACAGCCATGGCTTCAACCACTTCTGCTGCTGTATCCATGCTGTTGTCAGGTTCTTCAATATCTCATCCTACAGGTCACAATTCTGCATCTTTTGGAAATGCTCCTACATTGTTCAATGGTCTGAATTTCAGTCATTTTGGTCAATCAAGAGCAAAACAGTCCTTCTTTCCAACCCCTACCTCTAATTTGTTCCCAACAATCACTCTAGACATGACTTCCTCATCAACTCATGTCCATTGTTTACCTTCAAGTTTTGCTTCAAGCCCAAGATTCCCTCCATCAAATCTAAGCTTTTGCTACCCAGAACCCAACATCCCACCATCCTTTTGGGGCCAGGGACCTCCTAACAATGGCACTATGCCTATAGAGAAAACCCACATGAGGCCAGTTAATCTAGGAAACCAATTTCAAGAACATATCTACCAACACTGCATCAAGAACCAAACTCCTTTCAGGGATGTTTTGGAAGAAACACTAACCAAAGCAATTAGCACAGACCCAAGTCTTCAGTCTGTAATAGCTGCTGCAGTTTCATCTTTAGGGGGACAAGGATCTACCAATGGGAACCAGGGTGGAGGAATGAGTTTAGGTTCTGGCTTGAGCTTGAAACTTGGGGAGCATACTCAAAATGCTTCTTCCAATCTCTTGAACCAAAATGGGAAAGGATGCCTAACAAGCTACTTCAACAGATCATCATCTTCAAGTTCTCAGGGTGGAAACTTCATGCTTCTCCAACCTTCAAGGCCATTTTCACTCTCTGAGACAAACACACCTCCTTCCACAATTGATCACATCAACCACTGGGTTCCAGAAATCAATTCACATCATTAG 1647 0.4226 MEANMSSFCGQEIDESKVTSICSEKVCFTEEGSKEDKLKSAKAEMGEVKEENERLKMMLEQVEKDYHSLQLCFFDILQRETSKKSVKDSAPSHDEVEEPMLVSLSLGRSPREPKKDAIIGNSSKPKEKEDLEANLTLGLDSKTLSSMELVSDLSPMNNSEELKEAEAGGTCSTNKSARTKDGDDEISELTPTKRARVCVRTRCDTPTMIDGCQWRKYGQKIAKGNPCPRAYYRCTVAPACPVRKQVQRCSEDMSILITTYEGTHNHPLPVSATAMASTTSAAVSMLLSGSSISHPTGHNSASFGNAPTLFNGLNFSHFGQSRAKQSFFPTPTSNLFPTITLDMTSSSTHVHCLPSSFASSPRFPPSNLSFCYPEPNIPPSFWGQGPPNNGTMPIEKTHMRPVNLGNQFQEHIYQHCIKNQTPFRDVLEETLTKAISTDPSLQSVIAAAVSSLGGQGSTNGNQGGGMSLGSGLSLKLGEHTQNASSNLLNQNGKGCLTSYFNRSSSSSSQGGNFMLLQPSRPFSLSETNTPPSTIDHINHWVPEINSHH 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2108g00010 548 FunFam probable WRKY transcription factor 31 193 270 - -
Gabi2108g00010 548 SUPERFAMILY WRKY DNA-binding domain 200 269 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi2108g00010 548 Gene3D WRKY domain 193 270 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi2108g00010 548 Coils Coil 38 65 - -
Gabi2108g00010 548 MobiDBLite consensus disorder prediction 109 129 - -
Gabi2108g00010 548 ProSiteProfiles WRKY domain profile. 203 269 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi2108g00010 548 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 30 462 IPR044810 GO:0003700
Gabi2108g00010 548 SMART WRKY_cls 208 268 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi2108g00010 548 MobiDBLite consensus disorder prediction 85 129 - -
Gabi2108g00010 548 Pfam WRKY DNA -binding domain 210 267 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi2108g00010 548 MobiDBLite consensus disorder prediction 159 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2108g00010 Gabi-Chr2108 156216 159184 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2108g00010 45 462 WRKY Transcription Factor Family AT5G15130 43.133 1.36e-83 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gabi2108g00010 WRKY 6.3e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2108g00010 - - lang:109353541 731.095