Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2108g00007 ATGTCAAGGGAAAGTGAGAAGGAAAAAAGTTTATCTAAGAAGATAAAGCAGAATATAACAATAAAAGAAATGGAAATGGTGATAAAGAATGAAGATAACACGAGCAGGAGGTGCATGTCCATGGCAGAAGGTGAGTTTCAACTATCTCGGTGTGCCAAGAGACAAAGAAGAGAGCCTGCAGCAGCTGCACTTAAATATGAGGATAACCAAGATCAGAAGCAACAGTTACTGCCACAGCAACAAGTTGATCAAAATTCTACTACAAGCCCAAAAAAGAGAAGTTCAAAATTTCGGGGTGTCAGCAGACATAGATGGACGGGTCGATTTGAAGCTCACTTATGGGACAAGCTCTCTTGGAACATAACCCAAAAGAAGAAAGGGAAGCAAGTTTACCTTGGCGCTTATGGTGAAGAAGAATCAGCAGCTAGAGCATATGACTTAGCTGCACTTAAGTACTGGGGAACATCAACTTTAACCAATTTTCCGATCACTGATTATGAAAAAGAGATAGAGATAATGCAGACTATGACAAAAGAGGAGTACTTGGCCACTTTAAGGAGAAAGAGTAGTGGCTTTTCAAGAGGCTTATCAAAGTATAGGGGTGTCGCAAGGCACCACCACAATGGTAGATGGGAAGCAAGGATTGGGAGGGTTTTCGGAAACAAATATCTCTACCTTGGCACCTACAGCACCCAAGAGGAAGCTGCTCGTGCTTATGACATAGCGGCCATTGAGTACAGAGGGATCCATGCTGTAACCAACTTCGATTTGAGTACTTACATAAGATGGTTAAATCCATCAAGAGGAACTATCTCAGAAGTAAAACTTGAATCAGAGGTAGTACCAGAGACTCAGACAGCGGCATCCCAATCTAACTATTCTCCAATAGAGGTGTCCAAATCCTTGGCCCTTCACAGTAGTACTTTCAATTCAGATTATCTGAATTATCCCCAAAAGCATGAAGTCTTTGAAAACAAAACATACCAAATCTCCAACACTAAGTCATCTTCTCCAACTGCACTTGGCCTCCTTCTCCGGTCTTCAATATTCAGAGAATTAGTTGAAAAGAATTTGAACATATCTGGAGATGAAACTGATGGTGAAGACACAACAGAACAACAGCCACAGATAGCTAGGGAAGATGAGTTGGCTGGGATCTTTTAA 1164 0.4141 MSRESEKEKSLSKKIKQNITIKEMEMVIKNEDNTSRRCMSMAEGEFQLSRCAKRQRREPAAAALKYEDNQDQKQQLLPQQQVDQNSTTSPKKRSSKFRGVSRHRWTGRFEAHLWDKLSWNITQKKKGKQVYLGAYGEEESAARAYDLAALKYWGTSTLTNFPITDYEKEIEIMQTMTKEEYLATLRRKSSGFSRGLSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGIHAVTNFDLSTYIRWLNPSRGTISEVKLESEVVPETQTAASQSNYSPIEVSKSLALHSSTFNSDYLNYPQKHEVFENKTYQISNTKSSSPTALGLLLRSSIFRELVEKNLNISGDETDGEDTTEQQPQIAREDELAGIF 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2108g00007 387 MobiDBLite consensus disorder prediction 66 100 - -
Gabi2108g00007 387 MobiDBLite consensus disorder prediction 360 387 - -
Gabi2108g00007 387 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 68 290 - -
Gabi2108g00007 387 CDD AP2 197 258 IPR001471 GO:0003700|GO:0006355
Gabi2108g00007 387 SMART rav1_2 96 168 IPR001471 GO:0003700|GO:0006355
Gabi2108g00007 387 SMART rav1_2 198 262 IPR001471 GO:0003700|GO:0006355
Gabi2108g00007 387 Pfam AP2 domain 197 248 IPR001471 GO:0003700|GO:0006355
Gabi2108g00007 387 Pfam AP2 domain 95 154 IPR001471 GO:0003700|GO:0006355
Gabi2108g00007 387 CDD AP2 95 164 IPR001471 GO:0003700|GO:0006355
Gabi2108g00007 387 FunFam AP2-like ethylene-responsive transcription factor 197 258 - -
Gabi2108g00007 387 ProSiteProfiles AP2/ERF domain profile. 198 256 IPR001471 GO:0003700|GO:0006355
Gabi2108g00007 387 FunFam AP2-like ethylene-responsive transcription factor 95 164 - -
Gabi2108g00007 387 SUPERFAMILY DNA-binding domain 197 258 IPR016177 GO:0003677
Gabi2108g00007 387 Gene3D AP2/ERF domain 95 164 IPR036955 GO:0003700|GO:0006355
Gabi2108g00007 387 Gene3D AP2/ERF domain 197 258 IPR036955 GO:0003700|GO:0006355
Gabi2108g00007 387 PRINTS Ethylene responsive element binding protein signature 97 108 IPR001471 GO:0003700|GO:0006355
Gabi2108g00007 387 PRINTS Ethylene responsive element binding protein signature 238 258 IPR001471 GO:0003700|GO:0006355
Gabi2108g00007 387 MobiDBLite consensus disorder prediction 68 94 - -
Gabi2108g00007 387 ProSiteProfiles AP2/ERF domain profile. 96 162 IPR001471 GO:0003700|GO:0006355
Gabi2108g00007 387 SUPERFAMILY DNA-binding domain 95 163 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2108g00007 Gabi-Chr2108 95894 97930 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2108g00007 72 310 AP2-EREBP Transcription Factor Family AT5G57390 56.000 4.79e-85 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Gabi2108g00007 AP2 3.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2108g00007 - - ahf:112716370 557.37