LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi2106g00027	ATGATATATGTTCGTGAATCTCATGTTGAAAAGATGGGAAAAATTCAAGATGTTTCGTACGAGATTTTGAATGTGCTTGAGTTTAACAGTACAAGGAAGCGTCAATCTGTTGTATGTCGTTATCCAGATGGGAGGCTTCTATTGTACTGTAAGGGTGCTGATACTGTAATCTTTGAGAGATTAGCTGATGGTTATAATGACATAAAAAAAGTGACCAGGGAGCATTTGGAACAATTTGGATCTTCTGGACTACGCACATTATGCCTGGCTTACAAAGAATTACATCCTGATGTTTATGAAAGTTGGAATGAGAAGTTCATCCAGGCCAAATCTTCTCTACGTGATCGTGAAAAGAAGTTAGATGAGGTGGCAGAACTTATAGAAAATGATCTCATTTTGATTGGTAGCACTGCCATTGAAGACAAGCTTCAAGAAGGAGTACCAGCCTGCATAGAGACTCTTCAGAGAGCTGGCATTAAAATTTGGGTGCTTACAGGTGACAAGATTGAAACAGCAATTAATATTGCCTATGCATGCAATTTAATAAACAATGAGATGAAGCAATTTATTATCAGTTCAGAAACTGATGCAATTAGAGAAGTTGAAGACAGGGGGGACCAAGTAGAAATTGCACGATTTATTAAAGAAGTAGTGAAGATAGAGCTGACAAAGTGCCTTGAGGAAGCACAGAACTATTTTAGCTCTCTATCTGGACCAAAATTAGCACTTGTAATTGATGGGAAATGTCTGATGTATGCATTGGATCCAAGTTTAAGAGTCATGCTACTGAATTTGAGTTTGAATTGTCATGCTGTTGTTTGCTGCCGAGTTTCTCCTTTACAAAAAGCACAGGTCACAAGTCTGGTGAAGAAAGGTGCACGGAAAATAACACTTGGTATCGGTGATGGAGCCAATGATGTTAGCATGATTCAAGCTGCTCACGTTGGTGTTGGCATAAGTGGGTTGGAGGGGATGCAAGCCGTGATGGCTAGTGATTTTGCTATCGCACAGTTTCGTTACCTTGCGGATTTGCTACTTGTTCATGGCCGGTGGTCTTATCTTCGAATATGCAAGGTGGTGACATACTTCTTTTACAAGAATCTGACGTTCACTCTTACTCAGTTTTGGTTTACCTTTCAAACTGGGTTTTCTGGCCAGAGATTCTATGATGACTGGTTTCAGTCATTATATAATGTTATCTTCACTGCCCTGCCTGTCATCATCGTTGGACTATTTGACAAGGATGTCAGTGCATCTTTATCCAAGAAGTATCCTGAACTATACAGGGAGGGAATAAGAAATGTCTTTTTCAAATGGAGAGTTGTGGCTATATGGGCCTTTTTCTCTGTCTACCAGTCTCTAATATTCTTCTATTTTGTGAGTACGTCAAGTTTAAGTGCTAAAAATTCAGCAGGCAAGACATTTGGGCTCTGGGATGTCAGTACAATCGCCTTTACATGTGTTGTTGTAACTGTCAACTTGCGACTTCTTATGATTTGTAATTCAATCACAAGATGGCACTATATTAGTGTTGGTGGAAGTATATTAGCATGGTTTATTTTTGTTTTTATATATTCAGGGATCAGAACTCCTTATGATCGACAGGAGAATATGTATTTTGTCATATATGTCTTGATGAGTACATTATATTTCTACCTCACGCTATTTCTTGTCCCTATTGCGGCACTTTTTTGTGACTTTGTTTACCAAGGGGTTCAGAGATGGTTCTTCCCCTATGATTATCAGATTATTCAAGAAATGCATAGATATGAGAGTGATGACAACAGCAGGGCACAACTGCTAGAGATAGGGAACCAGCTGACTCCAGCAGAGGCAAGGAGCCATAGCATATCTCAACTCCCACGTGAGATATCGAAGCACACCGGGTTTGCTTTTGATTCACCTGGTTACGAATCCTTTTTTGCTGCACAGTTCGGTGTATATGCCCCACAAAAGGCATGGGATGTTGCAAGACGAGCTAGCATGAAATCTCGGCCAAAGATTGGACAGAAAAAGTAA	2019	0.3987	MIYVRESHVEKMGKIQDVSYEILNVLEFNSTRKRQSVVCRYPDGRLLLYCKGADTVIFERLADGYNDIKKVTREHLEQFGSSGLRTLCLAYKELHPDVYESWNEKFIQAKSSLRDREKKLDEVAELIENDLILIGSTAIEDKLQEGVPACIETLQRAGIKIWVLTGDKIETAINIAYACNLINNEMKQFIISSETDAIREVEDRGDQVEIARFIKEVVKIELTKCLEEAQNYFSSLSGPKLALVIDGKCLMYALDPSLRVMLLNLSLNCHAVVCCRVSPLQKAQVTSLVKKGARKITLGIGDGANDVSMIQAAHVGVGISGLEGMQAVMASDFAIAQFRYLADLLLVHGRWSYLRICKVVTYFFYKNLTFTLTQFWFTFQTGFSGQRFYDDWFQSLYNVIFTALPVIIVGLFDKDVSASLSKKYPELYREGIRNVFFKWRVVAIWAFFSVYQSLIFFYFVSTSSLSAKNSAGKTFGLWDVSTIAFTCVVVTVNLRLLMICNSITRWHYISVGGSILAWFIFVFIYSGIRTPYDRQENMYFVIYVLMSTLYFYLTLFLVPIAALFCDFVYQGVQRWFFPYDYQIIQEMHRYESDDNSRAQLLEIGNQLTPAEARSHSISQLPREISKHTGFAFDSPGYESFFAAQFGVYAPQKAWDVARRASMKSRPKIGQKK	672

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi2106g00027	672	Gene3D	-	133	340	IPR023214	-
	Gabi2106g00027	672	NCBIfam	HAD-IC family P-type ATPase	273	379	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
	Gabi2106g00027	672	FunFam	Phospholipid-transporting ATPase	1	132	-	-
	Gabi2106g00027	672	Pfam	Phospholipid-translocating P-type ATPase C-terminal	328	578	IPR032630	-
	Gabi2106g00027	672	NCBIfam	phospholipid-translocating P-type ATPase	10	586	IPR006539	GO:0000287\|GO:0005524\|GO:0015914\|GO:0016020\|GO:0140326
	Gabi2106g00027	672	SUPERFAMILY	HAD-like	126	348	IPR036412	-
	Gabi2106g00027	672	PANTHER	PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE	3	624	-	-
	Gabi2106g00027	672	Pfam	Cation transport ATPase (P-type)	19	60	-	-
	Gabi2106g00027	672	Gene3D	-	5	132	IPR023299	GO:0000166
	Gabi2106g00027	672	FunFam	Phospholipid-transporting ATPase	133	340	-	-
	Gabi2106g00027	672	SUPERFAMILY	Metal cation-transporting ATPase, ATP-binding domain N	19	147	IPR023299	GO:0000166
	Gabi2106g00027	672	SUPERFAMILY	Calcium ATPase, transmembrane domain M	349	578	IPR023298	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi2106g00027	Gabi-Chr2106	282006	289929	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi2106g00027	1	671	Primary Pumps ATPases	AT1G59820	81.818	0.0	1180

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi2106g00027	K14802		-	gmx:100815547	1246.11