LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi2106g00018	ATGTCTCGCACGTGCTCACAGTGCGGTAACAACGGTCACAACTCCCGCACATGCACCGATGGTGGCGCCGCCGCATCCTGCGGCGGCGGATGCTCGCCGAGAGAGAACGGGATCATGCTGTTCGGCGTGCGAGTCACCGAAGGGAACAACTCCTCCTTCAGGAAGAGTGCTAGCATGAATAACCTCTCCCAATACGAGCAGCCGCCGCCGCAGGACTCCAACGCCGCCGACGCCGGCTACGCCTCCGACGACGTGGTTCACGCCTCCGGCCGAAGCCGCGAGCGCAAGCGAGGTGTTCCTTGGACTGAGGAAGAGCATAAGTTGTTCCTGTTGGGTTTACACAAGGTCGGCAAAGGTGATTGGAGAGGGATTTCTAGAAACTTCGTCAAAACTCGGACACCAACTCAGGTTGCCAGTCATGCTCAGAAGTACTTCCTCCGCCGCCACAATCAGAACCGCCGCCGCCGGAGATCTAGCCTTTTTGACATCACCACCGATACGATGATGGAATCTTCTACCATAATGGAAGAAGAACAAGTTCAACAAGAAACGATGCCACCACCAACACCGGCCGCATATCCGCCGTCACATTACGGTGGCTTCTCCGGCTCCGCTTTCCCGATGGCTCTGACTCCGGTGGTGTTGCCGGTGTCGGGTGGTGAGAGACCAGCGAAGCCGATTAGGCCAACGCCGATTTTGCCAATTCCTCCGTCTTCCAAGTTGGCTAACTTGAACTTGAAAGAGAAAGCTTCTCCTCCTCCTCCTCTCATTGAGCCTCTGCCATTGTCGCTGAAGCTTCCACCGTCACCGCCGTCAATGGAGCAGTCGCCGCCAGCTACTAGCCTTTCATCGCCATCGTCGTCGTCCTCGGCTTTTCAGGCTATGTCTGCAGGAAAGTTCAGCGGTGGTGGGGATAGTATTATCACTGTTGCTTGA	936	0.5662	MSRTCSQCGNNGHNSRTCTDGGAAASCGGGCSPRENGIMLFGVRVTEGNNSSFRKSASMNNLSQYEQPPPQDSNAADAGYASDDVVHASGRSRERKRGVPWTEEEHKLFLLGLHKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRHNQNRRRRRSSLFDITTDTMMESSTIMEEEQVQQETMPPPTPAAYPPSHYGGFSGSAFPMALTPVVLPVSGGERPAKPIRPTPILPIPPSSKLANLNLKEKASPPPPLIEPLPLSLKLPPSPPSMEQSPPATSLSSPSSSSSAFQAMSAGKFSGGGDSIITVA	311

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi2106g00018	311	FunFam	transcription factor MYB1R1	99	150	-	-
	Gabi2106g00018	311	Gene3D	-	99	150	-	-
	Gabi2106g00018	311	ProSiteProfiles	SANT domain profile.	96	149	IPR017884	-
	Gabi2106g00018	311	MobiDBLite	consensus disorder prediction	276	296	-	-
	Gabi2106g00018	311	ProSiteProfiles	Myb-like domain profile.	93	145	IPR001005	-
	Gabi2106g00018	311	ProSiteProfiles	Zinc finger CCHC-type profile.	5	20	IPR001878	GO:0003676\|GO:0008270
	Gabi2106g00018	311	MobiDBLite	consensus disorder prediction	252	275	-	-
	Gabi2106g00018	311	PANTHER	TRANSCRIPTION FACTOR KUA1	1	265	-	-
	Gabi2106g00018	311	MobiDBLite	consensus disorder prediction	245	311	-	-
	Gabi2106g00018	311	SUPERFAMILY	Homeodomain-like	95	148	IPR009057	-
	Gabi2106g00018	311	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	93	149	IPR017930	-
	Gabi2106g00018	311	MobiDBLite	consensus disorder prediction	52	78	-	-
	Gabi2106g00018	311	Pfam	Myb-like DNA-binding domain	100	145	IPR001005	-
	Gabi2106g00018	311	CDD	SANT	100	145	IPR001005	-
	Gabi2106g00018	311	NCBIfam	myb-like DNA-binding domain, SHAQKYF class	96	147	IPR006447	GO:0003677
	Gabi2106g00018	311	MobiDBLite	consensus disorder prediction	52	71	-	-
	Gabi2106g00018	311	SMART	sant	97	147	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi2106g00018	Gabi-Chr2106	210184	211943	Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB-related	Gabi2106g00018		Myb_DNA-binding	1.1e-11	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi2106g00018	-		-	gmx:778178	392.119