Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2106g00011 ATGAAGAGGTCCAGAGATGATGTTTTCATGAGTTCTTCTCAACTCAAACGGCCGCCCATCGCGTCTTCCCGAGGAGAAGCATCGGGGCAACCCCAGATGATGAATGGAGGTGCTCAGAAACTGACTACTAATGATGCCTTATCATATCTTAAGGCAGTGAAGGATATATTTCAAGACAAGAGGGATAAGTATGATGACTTTTTGGAGGTCATGAAAGATTTCAAGGCCCAAAGAATTGATACTGCAGGTGTCATAGCAAGAGTGAAGGACCTTTTTAAGGGGCATAGAGATCTAATATTGGGATTTAACACCTTCTTGCCAAAGGGATATGAAATCACACTTCCACTGGAGGATGAACAACCTCCCCAAAAGAAACCTGTTGAATTTGAAGAAGCTATAAATTTTGTGAACAAGATAAAGACTCGGTTTCAAGGTGATGATCATGTTTATAAGTCGTTTCTAGACATATTGAATATGTACAGGAAGGAAAACAAGTCTATCACTGAGGTTTACCAGGAGGTCGCTGCACTTTTCCAAGACAACCCTGATCTTCTGGATGAGTTCACTCATTTTCTTCCAGACACTTCCGCAGCACCCTCTACTTATTATGCTTCTGCTCGGAATTCTATGCTTCGTGATAGGAGCTCTGTAATGCCAACAATGAGGCAAATGCATGTTGAGAAGAGAGAAAGGACCATGGCTTCACATGGTGAACGTGATCTCAGTGTTGACCGCCCTGACCCAGATCATGACAGAGGTTTGTTGAGGACGGAAAAGGAGAAGAGGAGACGTGTGGAGAAGGAAAAGGACCGTCGAGAAGATAGAGACAGGAGAGAAAGGGAGGATAGAGATTATGAGCATGACGTGGGTCGAGAAAGGGAGCGGTTCTCCCACAAACGGAAATCTGATCGTAAGGCTGAAGACTCTGGAGCTGAACCATTGCTTGATGCAGATGAAAATTTTGGTATACGCCCTATGTCATCCACTTGTGATGATAAAATTTCTCTGAAAAGTATGTATAGCCAAGAGCTTGCTTTCTGTGAAAAAGTCAAAGAGAAATTACGAAATCCTGATGACTATCAGGAATTTTTGAAGTGTATACATATTTACAGCAATGAAATAATTACCCGACAAGAATTGCAGTCATTGGTTGGAGATTTACTGGGAAAATATCCAGATCTTATGGAGGGGTTTAATGAATTTTTGGTACAATCTGAAAAGAAGGATGGTGGATTCCTTGCTGGTGTCATGAATAAAAAGTCTTTATGGAGTGAAGGACATGGACTGAAAGCAATGAAGGTTGAAGACCGAGATAGAGACCGTTATAGGGATGATGGGATGAAAGAGAGGGATCGGGAATGCCGAGAAAGGGATAAATCTACTGTGATTGCCAACAAGGATGTTTCGGGTCCTAAGATGTCTCTATATCTTAGCAAGGATAAGTATTGCTCAAAACCTATAAATGAGCTGGACCTTTCTAACTGTGACCAATGCACTCCCAGTTACCGTCTCCTACCAAAAAATTACCTAATACCTTTGGCTAGCCAGAAAACAGAACTTGGTGCAGAAGTGTTGAATGATCACTGGGTGTCTGTCACTTCAGGAAGTGAGGATTATTCCTTTAAACATATGCGTAAAAATCAATATGAAGAGAGCTTGTTTAGATGTGAAGATGACAGGTTTGAACTTGACATGTTGTTAGAGTCTGTAAATGTAACAACCAAACGAGTGGAAGAGCTGTTAGAAAAGATCAATAATAATACAATTAAAGGAGACAGCCCAATTCGTATTGAGGAGCACTTAACAGCTCTAAATCTTAGGTGTATTGAACGATTATATGGTGACCATGGGCTTGATGTGATGGAGGTGTTAAGGAAGAATGCACCTCTAGCTTTGCCAGTGATATTAACACGCTTGAAGCAGAAACAGGATGAGTGGGCGAGGTGTCGTGCTGATTTTAGTAAAGTTTGGGCTGAAATATATGCTAAGAACTATCACAAATCTCTTGATCATCGTAGTTTCTACTTTAAGCAACAGGATTCAAAAACCTTGAGCGCCAAAGCCTTACTGGCAGAAATCAAAGAAATTAGTGAGAAGAAACGCAAAGAAGATGACGTCCAACTTGTGATTGCTGCTGGAAATAGACGGTCTATTCTTCCAAACTTGGAGTTTAAGTATCCTGATCCAGATATTCATGAAGACTTGTATCATCTCATAAAATATTCCTGTGGAGAAGTTTGCACAACTGAACAGTTGGATAAAGTTATGAAGATTTGGACAACATTTTTAGAACCCATGCTTTGTGTTCCTTCTCGGCCCCAGGCTACCGAGGATACTGAAGATGTTGTCAAGGCTAAAAATAATTATGTCAAAAGTTGCACTGCAAGTGTTGTGGAAAGTGATGGTAGTCCTGGTGTTGGTGCTACCATAATGAATCCGAAGCATATAAATACTTCTAGAAATGGGGATGAGCGTATGCCAGTAGATCAATCAACTTCTAGCAAAGCATGGCAATCAAATGGTGATAGTGGGGTTAGAGAAGACAAGTGTCTTGATTCAGACCGTACTGTGTGTAAAACTGAAACATCAGGCTGTAATACATTACACGGTAATATGAATATTATTGCATTCACACCTGATGAACTATCACGAGTCAATAAGCAAGATCACTCCAGTAAACGGTTAGTGAATGCTAATGTCTCACCAGCATCTCAAACGGAGCAAAGTAATGGAAGAACAAACACAGATAATGCATCAGGACTTACTGCTGCTCCATCCAGACCTGATATGGTTTCTGTCGAGGGAGGACTTGATTTACCTTCATCTGAGGGTGGCAATTGTGTTATACCTGGTACATCCACAATTGGGGCTATCACTGGTGGCATCGAAGTTCACAAATACCAAGAGGAATCGGTTCGGCACTTCAAAAGTGAAAGAGAAGAGGGTGAGTTATCTCCAACTGGAGACTTTGAAGAGGATAACTTTGCAGTTTATGGAGATACTGGTTTGGGCGCAGTTCATGAAGGAAAGGATGGTGGTGTGAATCGGCAATACCAAAATAGACATGGAGAAGAAGTTTGTGGTGAAGCCAGAGGAGAAAATGACGTTGATGCTGATGATGAAGGTGAAGAAAGTCCTCACAGGTCATCAGAGGACAGTGAAAATGCTTCTGAGAATGTTGATGTTTCTGGAAGTGAGTCTGCTGATGGTGATGAGTGTTCTCGAGAAGAGCATGAGGATGGGGAACATGATAACAAGGCTGAGAGTGAAGGTGAAGCTGAAGGAATGGTTGATGCCCTTGATGTTGAAGGAGATGGAACATCATTGCCATTTTCTGAACGCTTTCTACTAACTGTAAAGCCTTTGGCAAAGCATGTTCCCCCGCTGTTACATGAGAAAGAAAGGAATTCTCGAGTTTTTTATGGAAATGACTCCTTTTACGTGCTGCTTAGACTTCATCAGACATTGTATGAGAGGATACAATCAGCAAAGTTTAACTCATCATCTGCTGAAAGGAAATGGAGGGCTTCAAGTGATACAAGTTCTACTGATCAATACGACAGGTTCATGAATGCCCTTTACAATTTACTGGACGGTTCTTCTGATAATACAAAATTTGAGGATGATTGTCGAGCTATTATTGGAACTCAATCATATGTCTTATTCACGTTGGACAAGTTGATATATAAACTTGTTAAACAGCTTCAAGCTGTTGCCTCTGATGAGATGGATAACAAGCTTCTCCAACTATATGCATATGAGAAATCAAGAAAACCTGGAAGATTTATGGATATAGTTTATCATGAAAATGCCCGTGTTCTTCTTCATGATGAGAACATATATCGTATTGAATATTCACCTGGACAAATGAATCTGACTATTCAACTGATGGACTGTGGACATGATAAGCCTGAAGTGACTGCTGTGTCGGTGGACCCTAATTTCTCAGCCTATTTGCACAATGACTTCCTCTCTATTGTGCCTGACAATAAGGAGAAGTCTGGAATTTTCTTGAAGAGGAATAAACGTAGATATGTCTGTGGAGATGAATTTTCTAGCAAGACTATTGAAGGACTACAAGTTATTAATGGCCTGGAGTGTAAGATAGCTTGCTGTTCATCTAAGGTATCATATGTTTTAGATACGGAAGACTTCTTGTTTCGGATGAGAAGGAAAAGAAGAGCCTTGTATCCACAGAATTCATGCCATGAACAGGCAAAGTCTTCAGACATTTTTTCTGGCAGAGTAAATCGGTTCCGCAAATTGTTTTCCATTACATGA 4281 0.4076 MKRSRDDVFMSSSQLKRPPIASSRGEASGQPQMMNGGAQKLTTNDALSYLKAVKDIFQDKRDKYDDFLEVMKDFKAQRIDTAGVIARVKDLFKGHRDLILGFNTFLPKGYEITLPLEDEQPPQKKPVEFEEAINFVNKIKTRFQGDDHVYKSFLDILNMYRKENKSITEVYQEVAALFQDNPDLLDEFTHFLPDTSAAPSTYYASARNSMLRDRSSVMPTMRQMHVEKRERTMASHGERDLSVDRPDPDHDRGLLRTEKEKRRRVEKEKDRREDRDRREREDRDYEHDVGRERERFSHKRKSDRKAEDSGAEPLLDADENFGIRPMSSTCDDKISLKSMYSQELAFCEKVKEKLRNPDDYQEFLKCIHIYSNEIITRQELQSLVGDLLGKYPDLMEGFNEFLVQSEKKDGGFLAGVMNKKSLWSEGHGLKAMKVEDRDRDRYRDDGMKERDRECRERDKSTVIANKDVSGPKMSLYLSKDKYCSKPINELDLSNCDQCTPSYRLLPKNYLIPLASQKTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLEKINNNTIKGDSPIRIEEHLTALNLRCIERLYGDHGLDVMEVLRKNAPLALPVILTRLKQKQDEWARCRADFSKVWAEIYAKNYHKSLDHRSFYFKQQDSKTLSAKALLAEIKEISEKKRKEDDVQLVIAAGNRRSILPNLEFKYPDPDIHEDLYHLIKYSCGEVCTTEQLDKVMKIWTTFLEPMLCVPSRPQATEDTEDVVKAKNNYVKSCTASVVESDGSPGVGATIMNPKHINTSRNGDERMPVDQSTSSKAWQSNGDSGVREDKCLDSDRTVCKTETSGCNTLHGNMNIIAFTPDELSRVNKQDHSSKRLVNANVSPASQTEQSNGRTNTDNASGLTAAPSRPDMVSVEGGLDLPSSEGGNCVIPGTSTIGAITGGIEVHKYQEESVRHFKSEREEGELSPTGDFEEDNFAVYGDTGLGAVHEGKDGGVNRQYQNRHGEEVCGEARGENDVDADDEGEESPHRSSEDSENASENVDVSGSESADGDECSREEHEDGEHDNKAESEGEAEGMVDALDVEGDGTSLPFSERFLLTVKPLAKHVPPLLHEKERNSRVFYGNDSFYVLLRLHQTLYERIQSAKFNSSSAERKWRASSDTSSTDQYDRFMNALYNLLDGSSDNTKFEDDCRAIIGTQSYVLFTLDKLIYKLVKQLQAVASDEMDNKLLQLYAYEKSRKPGRFMDIVYHENARVLLHDENIYRIEYSPGQMNLTIQLMDCGHDKPEVTAVSVDPNFSAYLHNDFLSIVPDNKEKSGIFLKRNKRRYVCGDEFSSKTIEGLQVINGLECKIACCSSKVSYVLDTEDFLFRMRRKRRALYPQNSCHEQAKSSDIFSGRVNRFRKLFSIT 1426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2106g00011 1426 MobiDBLite consensus disorder prediction 892 922 - -
Gabi2106g00011 1426 SUPERFAMILY PAH2 domain 334 402 IPR036600 GO:0006355
Gabi2106g00011 1426 SMART hdac_interact2seq4b 494 594 IPR013194 -
Gabi2106g00011 1426 Pfam C-terminal domain of Sin3a protein 1140 1386 IPR031693 -
Gabi2106g00011 1426 Coils Coil 255 275 - -
Gabi2106g00011 1426 MobiDBLite consensus disorder prediction 228 315 - -
Gabi2106g00011 1426 SUPERFAMILY PAH2 domain 121 194 IPR036600 GO:0006355
Gabi2106g00011 1426 Gene3D Paired amphipathic helix 335 406 IPR036600 GO:0006355
Gabi2106g00011 1426 MobiDBLite consensus disorder prediction 812 841 - -
Gabi2106g00011 1426 Gene3D Paired amphipathic helix 45 107 IPR036600 GO:0006355
Gabi2106g00011 1426 ProSiteProfiles PAH domain profile. 336 405 IPR003822 GO:0006355
Gabi2106g00011 1426 MobiDBLite consensus disorder prediction 1 38 - -
Gabi2106g00011 1426 SUPERFAMILY PAH2 domain 39 108 IPR036600 GO:0006355
Gabi2106g00011 1426 Pfam Paired amphipathic helix repeat 148 192 IPR003822 GO:0006355
Gabi2106g00011 1426 Pfam Paired amphipathic helix repeat 62 106 IPR003822 GO:0006355
Gabi2106g00011 1426 Pfam Paired amphipathic helix repeat 358 402 IPR003822 GO:0006355
Gabi2106g00011 1426 MobiDBLite consensus disorder prediction 1068 1093 - -
Gabi2106g00011 1426 Pfam Sin3 family co-repressor 497 588 IPR013194 -
Gabi2106g00011 1426 ProSiteProfiles PAH domain profile. 39 109 IPR003822 GO:0006355
Gabi2106g00011 1426 ProSiteProfiles PAH domain profile. 125 195 IPR003822 GO:0006355
Gabi2106g00011 1426 MobiDBLite consensus disorder prediction 228 312 - -
Gabi2106g00011 1426 MobiDBLite consensus disorder prediction 1014 1033 - -
Gabi2106g00011 1426 MobiDBLite consensus disorder prediction 973 994 - -
Gabi2106g00011 1426 FunFam Paired amphipathic helix protein SIN3 333 407 - -
Gabi2106g00011 1426 MobiDBLite consensus disorder prediction 1041 1055 - -
Gabi2106g00011 1426 MobiDBLite consensus disorder prediction 885 929 - -
Gabi2106g00011 1426 FunFam Paired amphipathic helix SIN3-like protein 124 195 - -
Gabi2106g00011 1426 Gene3D Paired amphipathic helix 123 196 IPR036600 GO:0006355
Gabi2106g00011 1426 PANTHER SIN3B-RELATED 39 1284 IPR039774 GO:0003714
Gabi2106g00011 1426 FunFam Paired amphipathic helix protein Sin3 45 107 - -
Gabi2106g00011 1426 MobiDBLite consensus disorder prediction 1006 1093 - -
Gabi2106g00011 1426 MobiDBLite consensus disorder prediction 804 845 - -
Gabi2106g00011 1426 Coils Coil 567 587 - -
Gabi2106g00011 1426 MobiDBLite consensus disorder prediction 15 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2106g00011 Gabi-Chr2106 112212 126239 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2106g00011 30 144 WRKY Transcription Factor Family AT4G12020 50.427 1.08e-24 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gabi2106g00011 Sin3a_C 4.6e-59 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2106g00011 K11644 - gmx:100811928 2337.76