Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2106g00003 ATGGCTTTGAAGGTGATGCTTCTTCTTACCCTTGTTCTTGTTTTGCACAGTTTTGTGATACCAACCTGCCATGGCCAGACTAGTTCTCCTCAGAATATTGAAACTTTCTATCCAATCGAATTTCCAGAACCAGTCCCCATAACACAACCTCCTACGCCACAAGCATCACCACCATCACCAGGGCTGAGACCAGTGGCAGCATCCACAACAAGCTCTTCATCAAACAGTAAGATAGTGCTGACTGTAGCTGCAACAGCAGCAAGTACTCTAGCTGTTTTTGGCTTGATTTTCTTTTTATTTCAAAGATGCTTCAGAGCAAAGAGGAGAAAGGAGATCCCCAACACTGTTGTGCCTCAGATAAACGTGTTTGAGAGAATGGAGGGAAACGTCAAGGGACTGATTGTTGATGAGGATGGTTTGGATGTGGTGTACTGGAGAAAGCTTGAATGCAAAACCTCAGACAAGGGTTTCCAAAAGGAGGTCTTGCCTAGTTCCAAAAACAAAGAAGAAGATGATCATGAAGGAAATCAAGGGAAAAGATATGGGCCCATTCAAGAAATTCCTCTGCTTAGAGGGAAATCTTCAACTTCCCATATGAGTATATTTCCAGAAGAGTCATATACAATTATGAGAATTCCACCTCCTTCTCCTCTTCATGTTTTTTCTGAATCAGTTGGAGTTGCTACCAAGGGTCTTCAGAAACCACCAGACTCTCCTACTCAAATATTTGCTCCACCCCCTCCCTTTTCATCACCCAAACCACCCTCCATCTCTTTATCATCAATTCCAAAAATGACAAGTCCTGCACCACCACCACCCCCTCCAACAATACTTGATAGAAAGAGTCAAGCACCACCACCACCACCTCCCCCTCCACCAATCCCAGATAGAAAGAGCCCAGCACCACCACCTCCGCCTCCACCAATCCCAAGTAGAAAGAGCCCAGCACCACCACCTCCTCCTCCACCAATCCCACATAGAAATACCCCTGCACCACCACCAATCCCTGCTAAAAAGAGTCCAGCACCACCTCCTCCTCCTCCATCAAAAGCAGGTGGCTTGAAGTCATCATCAAAACCACCACCTACCCCTATTGAAAAGTCAATTACCACAGGCAATGATCAAGTAAAACTGAAGCCTTTGCACTGGGACAAGGTGAATACTAATCTTGATCACTCTATGGTGTGGGACAAAATTGACCGTGGTTCTTTCAGGGTTGATGGTGATCTTATGGAAGCTCTTTTCGGGTACGCTGTCACCAACCGAAATAATAATACCCCAAAAGGAAATGACGCAACAAGTCCAAGCAGGGATGCCTCAGCTCCATCAACAAATGTTTTCCTTCTTGACCCCAGAAAATCACAAAACATTGCTATTGTTTTGAAATCTCTGGCAGTATCACGAAAAGAAATTATTGATGCACTCGCTGATGGTCAAGGTCTTAATACAGACGCCATTGAAAAGCTTGGCAGAATAGTCCCAACAGAAGAAGAGCAATCCCTTATACTTGAATATGAAGGACATCCAGCAAGACTTGCTGTTGCTGAATATTTCCTTTATCACATCCTCAAAGCTGTTCCTTCAGCATTTAAGCGCTTGAATGCAATGCTCTTCAGGTTGAACTATGACTCCGAGATTCTAGAAATCAAGGAGTTTCTACAGACCCTTGAGCTGGGGTGTAAGGAGCTTAGAAACCAAGGGGTATTTGTGAAGCTTCTTGAAGCAGTGCTCAAAGCTGGAAATCGTATGAATGCAGGTACTCAAAGAGGTAATGCTCAAGCTTTCAACTTGGCTTCTCTAAGAAAGCTCTCTGACGTAAAAAGCACTGATGGAAAAACCACATTGCTTCACTTTGTGGTTGAAGAAGTAGTTCGTTCTGAAGGAAAACGTGCTGTTCTTAACCGCAATCACAGTTTGAGTCGTAGTAACAGTAGGAGCAGCAGCAGCAGCAACAGCAGTGGACACTCTGAGAACTCTGATACTTCAAATGAGCAAAGACAAAGGGAATGTATAACGCTGGGGTTACCAATTGTAGGAGGGATCAGTTCTGAGTTTTCCAACGTCAAAAAAGCAGCGCTTATAGATTACAAAAGTTTTGTTGGTTCAATCTCAGCACTCGCAGCAAAAATAGTTGAAATTCGAGAACTTGTTCTCCAGTGTGGAAATGATGAAAGAGGAGGCTTTGTGAAAGAAATGAACCATTTTCTAGAAAATGCTAAGGTGGAATTGAAATTAGTGAGAGAAGAGCAGACAAGGGTAATGCAGCTTGTGAAGAGAACAACAGATTATTATCAAGGAGCTTCTTCAAAGGACAGTGCAGAACACCCTCTTCATCTATTTGTCATAGTCAAGGATTTTCTGGATATGGTTGATCAAACTTGTATTGAGATTGCACGTAACATGCAAAGGAGGAAGACAACTAGGGCAAATTTAGGGTAG 2439 0.4342 MALKVMLLLTLVLVLHSFVIPTCHGQTSSPQNIETFYPIEFPEPVPITQPPTPQASPPSPGLRPVAASTTSSSSNSKIVLTVAATAASTLAVFGLIFFLFQRCFRAKRRKEIPNTVVPQINVFERMEGNVKGLIVDEDGLDVVYWRKLECKTSDKGFQKEVLPSSKNKEEDDHEGNQGKRYGPIQEIPLLRGKSSTSHMSIFPEESYTIMRIPPPSPLHVFSESVGVATKGLQKPPDSPTQIFAPPPPFSSPKPPSISLSSIPKMTSPAPPPPPPTILDRKSQAPPPPPPPPPIPDRKSPAPPPPPPPIPSRKSPAPPPPPPPIPHRNTPAPPPIPAKKSPAPPPPPPSKAGGLKSSSKPPPTPIEKSITTGNDQVKLKPLHWDKVNTNLDHSMVWDKIDRGSFRVDGDLMEALFGYAVTNRNNNTPKGNDATSPSRDASAPSTNVFLLDPRKSQNIAIVLKSLAVSRKEIIDALADGQGLNTDAIEKLGRIVPTEEEQSLILEYEGHPARLAVAEYFLYHILKAVPSAFKRLNAMLFRLNYDSEILEIKEFLQTLELGCKELRNQGVFVKLLEAVLKAGNRMNAGTQRGNAQAFNLASLRKLSDVKSTDGKTTLLHFVVEEVVRSEGKRAVLNRNHSLSRSNSRSSSSSNSSGHSENSDTSNEQRQRECITLGLPIVGGISSEFSNVKKAALIDYKSFVGSISALAAKIVEIRELVLQCGNDERGGFVKEMNHFLENAKVELKLVREEQTRVMQLVKRTTDYYQGASSKDSAEHPLHLFVIVKDFLDMVDQTCIEIARNMQRRKTTRANLG 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2106g00003 812 Gene3D Formin, FH2 domain 389 811 IPR042201 -
Gabi2106g00003 812 MobiDBLite consensus disorder prediction 634 666 - -
Gabi2106g00003 812 Coils Coil 729 749 - -
Gabi2106g00003 812 MobiDBLite consensus disorder prediction 420 442 - -
Gabi2106g00003 812 MobiDBLite consensus disorder prediction 159 179 - -
Gabi2106g00003 812 MobiDBLite consensus disorder prediction 239 254 - -
Gabi2106g00003 812 MobiDBLite consensus disorder prediction 635 666 - -
Gabi2106g00003 812 MobiDBLite consensus disorder prediction 229 373 - -
Gabi2106g00003 812 MobiDBLite consensus disorder prediction 159 189 - -
Gabi2106g00003 812 SMART it6_source 365 805 IPR015425 -
Gabi2106g00003 812 PANTHER FORMIN-RELATED 30 802 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Gabi2106g00003 812 SUPERFAMILY Formin homology 2 domain (FH2 domain) 445 807 - -
Gabi2106g00003 812 ProSiteProfiles Formin homology-2 (FH2) domain profile. 368 812 IPR015425 -
Gabi2106g00003 812 MobiDBLite consensus disorder prediction 265 351 - -
Gabi2106g00003 812 MobiDBLite consensus disorder prediction 47 70 - -
Gabi2106g00003 812 Pfam Formin Homology 2 Domain 373 790 IPR015425 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2106g00003 Gabi-Chr2106 55131 58060 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2106g00003 9 806 FH2 protein (formin) Gene Family AT1G70140 43.932 0.0 570