Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2105g00003 ATGGCCGAATCCCTTCTCTTCAGCGTCGCAGACTCACTCATTGGGAAGATTACTTCTTTGACTGTTAAAGAAGCTTCTTCGGTGTTGAGTGTGAAGGCCGATCTGAATAGACTCAAAGAAACTTTGTCGTTCATCAAAGCTGTGCTGTTGGATGCAGAGCAAAAGCAGCAACAGAACAATGAGTTGCGTGTGTGGCTTAGACAGATTAAGCGTGTTTTCTCTGATGCCGAAGACATAATCGATGATGTTGAGTGCGAAGCGTTACGAAAGCATGTTGTCAACACTTACGTTAGCAACACAAGGAAGGTACGCCGTTTCTTTTCAACTTCAAATCCTCTTGTTTATCGTCTTCGAATGGCGCATCAGATCAAAGATATAAAACAGAGATTAGACAAGGTTGCCGCTGATAGGCATAAGTTTGGCCTTCAAACCATTGAGAATGATACACGTGTTGTGCATAGGAGGGAAATGACTCACTCCCATGTTGATGCTTCGGATGTGATAGGAAGGGAAAATGATAAAGATAAAATTTTAGAGCTTTTGTTACAGCATGATGGTGATGATAAAAGTCTATCTGTTATCCCCATCGTGGGAATGGGAGGCTTGGGGAAGACTACACTTGCAAAGTTGGTGTTTAACGATGAGAGGATAGACGATAAGTCTTTCCCATTGAAGATGTGGGTGTGTGTCTCTGACAATTTTGAGCTTGAGGATTTGCTTCGTAAAATTCTCAAGTCTGATACGGTTAGTAGTGCATCTGCTCCTACCCTAACTCACCAGGAAAGCTTTAAAAGTTGTGATATGGAGCAACTACAACATCTTGTAAGGAGTAAACTTGATGGTAAAAAGTTCTTGCTTGTCTTGGATGACGTATGGAATAGGGATCGTGTTAAATGGGTTGAGTTGAAGAATTTACTGCAAGGAGGTGCTGCAGAAAGTAAAATCTTGGTGACTACACGTAGCCACTCAGTTGCTACCATGGTGGCCACTGGTTCATCTTACGAATTACAAGGTCTTTCTGAAGATGATTCCTTGTCCCTATTTGTCAAATGGGCTTTTAAAGAAGGAGAAGAGAGGAGATATCCAGAATTGTCGAAGATTGGGAAAGAAATTATGAAAAAATGCGGTGGGCTTCCATTGGCAGTGAGAACATTAGGTAGTTCATTATTCTTGAAAGTTGATATGAAAGACTGGGAGTCTGTTAGAGACAATGAGATTTGGAAATTACCACAAAAAGAAGGTGACATTCTTCCTGCTTTACAATTAAGTTATGATCAACTGCCTTCATATTTAAAACCATGTTTTGCTTGCTTCTCCCTTTTCCCAAAAGACTTTGGTTTCCGTGCTTTTCATGTTATTAGGCTTTGGGAGGCACATGGTTTTCTTCCATCACCAAACAAAAACAAAACACCGCTTGATTTTGGCATCGAATTATTGCGTGAGCTACAATCAAGATCTTTCCTTCAAGATTTTATTGACTTTGGTACTGCTTGCATGTTTAAATTACACGATTTGGTGCTTGATCTTGCAATGTATGTTGCAAACAATGAGTTTCAGCTCATAAATTCCTGCGGTCAGAATATATTTGAGACTGCCCAGCATTTGTCATTCGTCAAAAATGATTTGCATGGTCAAACTTCCATTCCGAGAGGTTTGAGAACCGTAATTTTTCCTGAGGGTGCCAACGATGAAGCTTTCTTGAAAACATTGGTGTCGAGGTGCAAATACTTGCGGTTTTTGAAATTAATTAATTCTGAGTATGAGAGTTTGCCGCGCTCCATTGGTAAGTTGAAACATTTAAGATATCTCTGTCTCACTAATAATCAAATGTTGAAGAGTCTCCCTAAATCATTGAGCAAGCTCCAAAATCTGCAAGCTTTGCACCTCTCTAAATGCCCAAAGCTACAAACATTGCCCAAAGGAATAGGAAACTTGATCAGCCTTCGAATTTTGAGTATAAGCACAAAGCAATCTGATTTTCCGGACAATGATATTGCAAAATTGACTTCTCTAGAAATATTATGTGTGAAGTATTGTGACAATTTGGAGTCATTTATAGAAGGGATACGACTTCCTAATCTTAAACGGCTGGAAATTGTTTCTTGTGGGAGTCTAAAGTCTTTGCCAGTTCATGCATCTCCAAACCTAGAGACTTTGTTTATTATAGAGTGCGATAAGTTGGAACTGTCAAAGGGCGTTGACAACCAAATACCTCAATTAGAGTTAAAGTTTCTACAACTTCATTGTTTGCCACAGCTGGTGACTTGGCCTCAATGGCTGCAAAGATCTGTGAGCACATTACATTCTTTGATTATTAAAGATTGTGGTAATCTTGAGGAGCTTCCCGAGCAGCTGTCAGCTTCAATTTGTCTCAAAACACTTGCAATTGTGAATTGTCCAAAGTTGCATTCACTCCCAGATGATATGAATCTCTTCACCAACCTTGAATATTTACAAATTGGAAATTGCCTTGAACTATGCAGAAGATACCAGCCAGAAGTCGGACTAGATTGGCCCAAAATATCGCACATCAAACAAGTCTACATTTATCAACCGGTGAAGTAG 2565 0.3977 MAESLLFSVADSLIGKITSLTVKEASSVLSVKADLNRLKETLSFIKAVLLDAEQKQQQNNELRVWLRQIKRVFSDAEDIIDDVECEALRKHVVNTYVSNTRKVRRFFSTSNPLVYRLRMAHQIKDIKQRLDKVAADRHKFGLQTIENDTRVVHRREMTHSHVDASDVIGRENDKDKILELLLQHDGDDKSLSVIPIVGMGGLGKTTLAKLVFNDERIDDKSFPLKMWVCVSDNFELEDLLRKILKSDTVSSASAPTLTHQESFKSCDMEQLQHLVRSKLDGKKFLLVLDDVWNRDRVKWVELKNLLQGGAAESKILVTTRSHSVATMVATGSSYELQGLSEDDSLSLFVKWAFKEGEERRYPELSKIGKEIMKKCGGLPLAVRTLGSSLFLKVDMKDWESVRDNEIWKLPQKEGDILPALQLSYDQLPSYLKPCFACFSLFPKDFGFRAFHVIRLWEAHGFLPSPNKNKTPLDFGIELLRELQSRSFLQDFIDFGTACMFKLHDLVLDLAMYVANNEFQLINSCGQNIFETAQHLSFVKNDLHGQTSIPRGLRTVIFPEGANDEAFLKTLVSRCKYLRFLKLINSEYESLPRSIGKLKHLRYLCLTNNQMLKSLPKSLSKLQNLQALHLSKCPKLQTLPKGIGNLISLRILSISTKQSDFPDNDIAKLTSLEILCVKYCDNLESFIEGIRLPNLKRLEIVSCGSLKSLPVHASPNLETLFIIECDKLELSKGVDNQIPQLELKFLQLHCLPQLVTWPQWLQRSVSTLHSLIIKDCGNLEELPEQLSASICLKTLAIVNCPKLHSLPDDMNLFTNLEYLQIGNCLELCRRYQPEVGLDWPKISHIKQVYIYQPVK 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2105g00003 854 Gene3D - 148 333 IPR027417 -
Gabi2105g00003 854 Pfam Rx N-terminal domain 11 98 IPR041118 -
Gabi2105g00003 854 FunFam Probable disease resistance protein At1g61300 149 332 - -
Gabi2105g00003 854 Gene3D - 10 124 - -
Gabi2105g00003 854 Gene3D - 338 428 IPR042197 -
Gabi2105g00003 854 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 437 IPR027417 -
Gabi2105g00003 854 PRINTS Disease resistance protein signature 278 292 - -
Gabi2105g00003 854 PRINTS Disease resistance protein signature 619 635 - -
Gabi2105g00003 854 PRINTS Disease resistance protein signature 375 389 - -
Gabi2105g00003 854 PRINTS Disease resistance protein signature 193 208 - -
Gabi2105g00003 854 Coils Coil 35 55 - -
Gabi2105g00003 854 CDD RX-CC_like 8 134 IPR038005 -
Gabi2105g00003 854 PANTHER DISEASE RESISTANCE PROTEIN RP 35 820 IPR044974 GO:0006952
Gabi2105g00003 854 Gene3D Ribonuclease Inhibitor 515 736 IPR032675 -
Gabi2105g00003 854 Gene3D Ribonuclease Inhibitor 737 833 IPR032675 -
Gabi2105g00003 854 SUPERFAMILY L domain-like 494 842 - -
Gabi2105g00003 854 Pfam NB-ARC domain 170 425 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2105g00003 Gabi-Chr2105 15301 18945 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2105g00003 176 826 WRKY Transcription Factor Family AT5G45050 24.317 8.63e-20 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2105g00003 - - gmx:100780033 1020.76