Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2104g00030 ATGGTGAAGTACTCAAGAGAGCCTGACAATCCTACCAAGTCCTGCAAGGCTAGAGGCGCTGACCTTAGAGTTCACTTCAAGAACACTAGGGAAACTGCCCATGCCATTAGGAAGTTGCCCTTGGCAAAGGCTAAAAGGTACTTGGAGGATGTTCTCGCTCACAAACAGGCCATTCCATTCAGACGTTTCTGCAGGGGTGTTGGGAGGACAGCCCAGGCAAAAAATAGACACTCTAATGGACAGGGAAGGTGGCCTGTCAAATCAGCTAAATTCATCTTAGATTTACTCAAGAATGCTGAGAGTAATGCTGAAGTTAAAGGTTTGGATGTTGATGCTCTTTTTGTTTCACATGTCCAAGTCAATCAAGCACAGAAGCAAAGACGCAGAACATACCGAGCCCATGGAAGAATCAACCCCTACATGTCATCTCCCTGCCACATAGAGTTGATATTATCTGAAAAGGAAGAGCCTGTCAAGAAGGAGCCCGAGACCCAGTTGGCAACAAGCAAGAAGAAGTCCCAAGCTCTTCGAAGCGGTGCTTCATCTTAA 549 0.4645 MVKYSREPDNPTKSCKARGADLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALFVSHVQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKKKSQALRSGASS 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2104g00030 182 ProSitePatterns Ribosomal protein L22 signature. 127 151 IPR018260 GO:0003735|GO:0005840|GO:0006412
Gabi2104g00030 182 Pfam Ribosomal protein L22p/L17e 17 152 IPR001063 GO:0003735|GO:0005840|GO:0006412
Gabi2104g00030 182 MobiDBLite consensus disorder prediction 168 182 - -
Gabi2104g00030 182 NCBIfam 50S ribosomal protein L22 4 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Gabi2104g00030 182 SUPERFAMILY Ribosomal protein L22 1 154 IPR036394 GO:0003735|GO:0005840|GO:0006412
Gabi2104g00030 182 Hamap 50S ribosomal protein L22 [rplV]. 2 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Gabi2104g00030 182 CDD Ribosomal_L22 15 151 IPR001063 GO:0003735|GO:0005840|GO:0006412
Gabi2104g00030 182 PANTHER 60S RIBOSOMAL PROTEIN L17 1 175 IPR005721 GO:0003735|GO:0006412|GO:0015934
Gabi2104g00030 182 MobiDBLite consensus disorder prediction 154 182 - -
Gabi2104g00030 182 FunFam 60S ribosomal protein L17 1 175 - -
Gabi2104g00030 182 Gene3D Ribosomal protein L22/L17 1 181 IPR036394 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2104g00030 Gabi-Chr2104 202954 205880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2104g00030 1 182 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 88.462 3.05e-120 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2104g00030 K02880 - jre:109003161 347.821