Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2104g00009 ATGGCGGCTGGGAGGCATGGGGGTTACCGCGACAACGAATTCAGGGACCGCGAGTCCAACTTGGATGTTTCTAGGCGTGGTTTCGCGAATTCGAAAGAAGAGTACGATCGGGTTCGGAATGGTGGCCGTGATGTTGTGAGAGGTGGGAGCAGGGATGCGAGAGATAGGATTAGGATGAGGCAGAGGGATATCAGGGAGAGAGAAACCGTTAATGGCAGCTACCGGTCATCTTCGAGTCGGAGTGACTCCGGCAGCAGTGGTGGCGGCCTTGGCCCTCGTCGGTGTGGGTTTTCTGTCAAGGCAATGGATAGAGAGCCTGGTGAGCTTTCCAGTGAGAGTGGGTCTGATGATGCTATTGAATCAGAATCAGGGGTGAAAAACTGTGAGGTTGGTGTGTTTGAAGAAAACAGGACTCGGTCACCACCACCACCACCGGAGAGGAAAAGGAAATTTTCGCCTATAGTGTGGGATCAGGATGACAAGGAAGTGAACGAGTCATCCAAAGTTAGGGTTTCCTCCGCTGCTGTGACTGCTCTGCCTCCTCCACCTCCGCTGCCTAAAACGTTCCTTCAGTCGCAGTCACAATCGCCAAATGCAATGTGTGGTGGAGTTGAAATACATCCTGTCAGAAACAGAGAAACTGAGGATCTTGAGTTGCCGACAGCACCTAAGATTCCTCTGCCCTCTCCTTCAGGTTTGCATTCCTTGTCACCAAAACAGACTTGGGGTAATGATCAGGAAGCTGAGCAGCCAGAAGGTGAAGATTATGTTCCAACTCGTAACATATCTTCTTCAAGATGGGCAGCTGGTGATAACTCTCCTGGTGATGAGGGTGAAATCCTCGATGATGAGGAAATGCCTAAAAGAAGGAGGAGGCTGACTCCTGTGTTGTTGGATACTAGAGTAAGGAACAAGCTATTGAGCCCCGAGGAATCTAAAATAGAAGGTTTTGAAAGGGCTAGAGCTAAATCATCCGAGTCTGAAGAAAGAGGTATCCATGGAAGAATGTCCAGTGGTGATGATCATCCTGGTATTGAATCAGAGAAGGATGACTATATGGAGATTGATGCTCAAGGCAGGAAAAGTGAAACCAGCAACAGTCACTCAGATACGGATTCTGAAGATGCAGATGATAGCCGAGAGACTCCAGAACCTCCAGCTCCACCACAAAGAATGGTCAACATGCTTCAGGGTTGTAGAAGTGTTGATGAATTTGAGAGATTGAACAAAATAGATGAAGGAACGTACGGTGTTGTATATAGGGCTAGAGATAAGAAGTCTGGGGAAATTGTAGCATTGAAGAAGGTCAAGATGGAGAAGGAAAAAGAAGGGTTCCCTCTGACTTCTCTTAGGGAAATAAACATTCTTCTTTCTTTTCACCACCCATCTATAGTTGACGTTAAGGAAGTAGTGGTAGGTAGTAGCCTTGATAGTATTTTCATGGTTATGGAATATATGGAACATGATCTTAAAGGACTAATGGAGGCAATGAAGCAACCATTTAGCCAGAGTGAAGTAAAGTGCTTAATGATCCAGCTTTTAGAAGGTGTGAAATATCTTCATGACAATTGGGTGCTTCATAGGGATTTGAAGACTTCGAACCTTCTTCTAAATAATAGGGGTGAGCTAAAAATTTGTGATTTTGGGTTGGCTCGTCAGTATGGGAGTCCTTTGAAACCATATACGCACCTGGTGGTTACTCTTTGGTACAGGGCACCTGAACTTCTTCTAGGGGCAAAACAGTATTCAACAGCGATTGACATGTGGTCTCTAGGTTGTATAATGGCTGAGCTATTGTCTAAGGAACCACTATTTAATGGGAAAACAGAATTTGATCAACTTGACAAGATTTTCAGGATTCTTGGCACACCAAATAAAACAATTTGGCCTGGGTTCTCAAAATTACCTGGAGTCAAGGTCAATTTTGTCAAGCACCAGCTTCCAACTTTGGGTGGTTCTGGTATAACCTTCTCCGTAAAAAGTTCCCTGCTACATCATTCACTGGATCTCCAGTTCTTTCTGATTCTGGATTTGATTTGTTGA 2043 0.4528 MAAGRHGGYRDNEFRDRESNLDVSRRGFANSKEEYDRVRNGGRDVVRGGSRDARDRIRMRQRDIRERETVNGSYRSSSSRSDSGSSGGGLGPRRCGFSVKAMDREPGELSSESGSDDAIESESGVKNCEVGVFEENRTRSPPPPPERKRKFSPIVWDQDDKEVNESSKVRVSSAAVTALPPPPPLPKTFLQSQSQSPNAMCGGVEIHPVRNRETEDLELPTAPKIPLPSPSGLHSLSPKQTWGNDQEAEQPEGEDYVPTRNISSSRWAAGDNSPGDEGEILDDEEMPKRRRRLTPVLLDTRVRNKLLSPEESKIEGFERARAKSSESEERGIHGRMSSGDDHPGIESEKDDYMEIDAQGRKSETSNSHSDTDSEDADDSRETPEPPAPPQRMVNMLQGCRSVDEFERLNKIDEGTYGVVYRARDKKSGEIVALKKVKMEKEKEGFPLTSLREINILLSFHHPSIVDVKEVVVGSSLDSIFMVMEYMEHDLKGLMEAMKQPFSQSEVKCLMIQLLEGVKYLHDNWVLHRDLKTSNLLLNNRGELKICDFGLARQYGSPLKPYTHLVVTLWYRAPELLLGAKQYSTAIDMWSLGCIMAELLSKEPLFNGKTEFDQLDKIFRILGTPNKTIWPGFSKLPGVKVNFVKHQLPTLGGSGITFSVKSSLLHHSLDLQFFLILDLIC 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2104g00009 680 FunFam Cyclin-dependent kinase G-2 488 676 - -
Gabi2104g00009 680 SUPERFAMILY Protein kinase-like (PK-like) 397 645 IPR011009 -
Gabi2104g00009 680 MobiDBLite consensus disorder prediction 1 392 - -
Gabi2104g00009 680 Pfam Protein kinase domain 405 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2104g00009 680 MobiDBLite consensus disorder prediction 71 86 - -
Gabi2104g00009 680 FunFam cyclin-dependent kinase G-2 isoform X1 390 487 - -
Gabi2104g00009 680 Gene3D Transferase(Phosphotransferase) domain 1 488 664 - -
Gabi2104g00009 680 MobiDBLite consensus disorder prediction 8 70 - -
Gabi2104g00009 680 ProSiteProfiles Protein kinase domain profile. 405 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2104g00009 680 CDD STKc_CDC2L1 399 665 IPR045267 GO:0004674|GO:0005524|GO:0006468
Gabi2104g00009 680 MobiDBLite consensus disorder prediction 233 247 - -
Gabi2104g00009 680 MobiDBLite consensus disorder prediction 140 167 - -
Gabi2104g00009 680 ProSitePatterns Serine/Threonine protein kinases active-site signature. 525 537 IPR008271 GO:0004672|GO:0006468
Gabi2104g00009 680 SMART serkin_6 405 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2104g00009 680 Gene3D Phosphorylase Kinase; domain 1 390 487 - -
Gabi2104g00009 680 PANTHER CELL DIVISION PROTEIN KINASE 403 637 - -
Gabi2104g00009 680 MobiDBLite consensus disorder prediction 282 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2104g00009 Gabi-Chr2104 71484 74987 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2104g00009 396 636 Core Cell Cycle Gene Families AT5G10270 51.562 1.60e-84 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-PITSLRE Gabi2104g00009 Pkinase 7.1e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2104g00009 K08818 - gmx:100792524 1017.68