Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2104g00006 ATGGAGTCCGATTCAAACTCCGACGGATCTCACGTCTCTGCAACTCCCCCAAGACAAGCAAGTCCACCGCCATTGCCCTCACCGAGAAAACCACCTCTTCTAGTTTCCAAAAAATCCAGAATCAGAATCAAACCCTCAAGATCCAAATCAGTCCCTTCCGGACCCCCCAAAAGCCCTTCGAAACCCGACCCGGTCCTGGAAGACCCTTTCTGCCTCCCTACACTTCCCTTCCAAATTCGGCGACCCTCTGATTGTGTTCCCGCGCTCTCAACTGAAAACCTCCCCGCCGGCTTCTTCTCCAAATCCGCTTCCTTCTCGAAGATTCGAAGACCCCTTGTTCATCTAGAAGCTTCTGGAATCGATCCGGTTCTTAATTCCGCGTCTAATTCGGGCTCCAAAGTTGAGAGCGAGGAAGGTGGTGTTGATGCTAGGAAGTTGGGGAAATTCGGAAAGAAGCACCCTAACCTGATTGGTGCTAGTGTGCCAATGCCGAGTGTGAAGTTGCGAAAATGCGGCGGCGGCGAAGGGAACTTCGTGAGGTTGAACCTGAATGGGAAGAGAAAGAAGTTTGTGAACAAGGGGTGGAGGAAAAATGGGAAATTTCGTGGTGATAAAAGGTACAAGAGAAGTAGTAGTAAAGGTAAATTGGGACTTGAAGGGAAGGATCAAGTGGAGCCGGGTTTTGAGAAGGATATTTTGATTAGAGAAAGTGAACCTAAGAAGCAAAGGGGGTGTTGTAGGACAAAGGAGATTGATTGCAATGTGTTGGAAGAGGTTGTGTCTGCAGCTCGAGTTGACCCTTCGGACGAGAACTTGGTGAACTTGCTGAAATTGATTTATGGTTATGATTCTTTTCGAGATGGGCAATTGGAGGCAATCAAGATGGTTCTTGCTGGGAAATCAACTATGCTAATTTTACCAACAGGTGCAGGGAAATCGCTGTGTTATCAGTTGCCTGCTGTGATTTTTCCTGGGATTACTCTTGTTGTTAGTCCATTGGTAGCATTGATGATTGATCAGTTAAAGCATTTGCCTCCTGTGATTAAAGGTGGTCTTCTATGCAGCAGTCAGACACCTGAAGAAGCCTCTGAATCGCTCAACCAGCTTCGACAAGGTGCAATGAAGGTGCTTTTTGTTTCACCAGAGCGGTTCCTGAATGAAGAGTTTCTGTCTAGTATTTCTGCTTTGTCAGCCATCTCGCTTGTTGTTATTGACGAAGCGCATTGTATATCTGAATGGTCTCACAATTTCCGACCTTCATTCATGAGACTTAGAGCATCTCTGCTTCGTAAAAAGCTTAATGTAGGTTCTGTTCTTGCAATGACAGCAACTGCTACAACCACAACTTTAGATGCCATCATGTCTGCTCTAGATATTCCATACACAAATCTTATTCAGAAGGCACATTTAAGGGACAATTTGCATTTATCTGTGTCTTTGGTCAGAAATAGAATGAAAGACCTACTGATTCTGCTAAAGTCTTCTCCGTTTGCGGAAGTTCAAAGCATAATCATATACTGCAAATTTCAGTACGAAACTGATCTAATTAGCAGATACTTGAATGATAGCAATATCTTGGCAAAGAGTTATCATAGTGGTATCACTGCAAAGGAACGCAGCTATGTACAGGAGTTGTTTAGTTCCAACAAGATCAGAGTGGTTGTTGCAACTGTGGCATTTGGCATGGGACTAGATAAAAGAGATGTTGGAGCTGTAATTCATTACAGTTTGCCTGAAAGTCTGGAAGAGTATGTACAGGAGATAGGACGTGCTGGAAGGGATGGGAGATTGTCCTATTGTCACCTATTTTATGATGATGAGACATATTTCAAACTTCGGAGTTTAACGCACAGTGAAGGAGTGGATGAATATACAGTGAACAAATTTCTGCGTGAAGTGTTTCCTGCTGACAAAAGCTCCGGGAAAATCTGTTCATTAATCAGAGAATCTGCTTCCCGCAGGTTTGATATGAAAGAAGAGGTGATGCTCACACTTTTGACACGCTTGGAGTTGGGCGATGTGCAGTACTTGCATTTACTTCCACACATAAATGCAACTTGTGCTTTGATTTTTCATAAGACTACCCCTTCGTTCCTTGCCCGAAAGGTTTCTGCTATTGCTGTAATTCTAAAACGATCTGAAAATAAGCAAGGGCAATATGTTTTTGACATTCCAACTGTGGCAAATGACATGGGGGTCACAGCAGTTGAATTAACAAATCAGTTGTACGACCTGAAGATGATGGGAGAAATAACTTATGAAATGAAGGATTTGGCCTACTGTTATAGGATTGTTGAAATCCCCCCAGATTTTTTTTCTCTATCAGCAGATATTACCAGATGGTTATCAGAAGTTGAAAGTTGTAAGGTACAAAAAATGGATGCAATGTTTAATGCTGCATATTTCGCAGTAAATCTATGTGATAAGCTGCACGGATGCAGTAGTGCCGATCACACACCATGCTTGCAAAGGAAAATATTGGATTACTTTGCTGGAGTCGACAATACTGATTTCTGCAAGAAAATTGGTCAAAGCAGCCCTTTCCTGCGGGCAGATATAAAGGTCTTTCTACAGAGCAATTCACAGGCTCGATTTACACCTAGAGCCATTGCGAGGATAATGCACGGAATTGCAAGCCCAGCCTATCCTTCTACAACATGGTGTAAAACCCATTTCTGGGGAAGGTATACGCATATAGACTTTAAGGCGGTGATGGAAGCAGCAAAGGAGGAACTTAAGAATATTGTTGGAAAAGATATGCCCTAG 2766 0.4324 MESDSNSDGSHVSATPPRQASPPPLPSPRKPPLLVSKKSRIRIKPSRSKSVPSGPPKSPSKPDPVLEDPFCLPTLPFQIRRPSDCVPALSTENLPAGFFSKSASFSKIRRPLVHLEASGIDPVLNSASNSGSKVESEEGGVDARKLGKFGKKHPNLIGASVPMPSVKLRKCGGGEGNFVRLNLNGKRKKFVNKGWRKNGKFRGDKRYKRSSSKGKLGLEGKDQVEPGFEKDILIRESEPKKQRGCCRTKEIDCNVLEEVVSAARVDPSDENLVNLLKLIYGYDSFRDGQLEAIKMVLAGKSTMLILPTGAGKSLCYQLPAVIFPGITLVVSPLVALMIDQLKHLPPVIKGGLLCSSQTPEEASESLNQLRQGAMKVLFVSPERFLNEEFLSSISALSAISLVVIDEAHCISEWSHNFRPSFMRLRASLLRKKLNVGSVLAMTATATTTTLDAIMSALDIPYTNLIQKAHLRDNLHLSVSLVRNRMKDLLILLKSSPFAEVQSIIIYCKFQYETDLISRYLNDSNILAKSYHSGITAKERSYVQELFSSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFYDDETYFKLRSLTHSEGVDEYTVNKFLREVFPADKSSGKICSLIRESASRRFDMKEEVMLTLLTRLELGDVQYLHLLPHINATCALIFHKTTPSFLARKVSAIAVILKRSENKQGQYVFDIPTVANDMGVTAVELTNQLYDLKMMGEITYEMKDLAYCYRIVEIPPDFFSLSADITRWLSEVESCKVQKMDAMFNAAYFAVNLCDKLHGCSSADHTPCLQRKILDYFAGVDNTDFCKKIGQSSPFLRADIKVFLQSNSQARFTPRAIARIMHGIASPAYPSTTWCKTHFWGRYTHIDFKAVMEAAKEELKNIVGKDMP 921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2104g00006 921 MobiDBLite consensus disorder prediction 17 31 - -
Gabi2104g00006 921 Gene3D - 255 462 IPR027417 -
Gabi2104g00006 921 FunFam ATP-dependent DNA helicase Q-like 5 471 661 - -
Gabi2104g00006 921 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 400 409 IPR002464 -
Gabi2104g00006 921 MobiDBLite consensus disorder prediction 126 147 - -
Gabi2104g00006 921 FunFam ATP-dependent DNA helicase Q4 253 463 - -
Gabi2104g00006 921 MobiDBLite consensus disorder prediction 201 220 - -
Gabi2104g00006 921 PANTHER DNA HELICASE RECQ FAMILY MEMBER 261 786 - -
Gabi2104g00006 921 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 325 613 IPR027417 -
Gabi2104g00006 921 Pfam Helicase conserved C-terminal domain 499 594 IPR001650 -
Gabi2104g00006 921 CDD DEXHc_RecQ4-like 273 466 - -
Gabi2104g00006 921 Gene3D - 471 659 IPR027417 -
Gabi2104g00006 921 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 484 641 IPR001650 -
Gabi2104g00006 921 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 293 463 IPR014001 -
Gabi2104g00006 921 CDD SF2_C_RecQ 471 604 - -
Gabi2104g00006 921 MobiDBLite consensus disorder prediction 1 16 - -
Gabi2104g00006 921 SMART helicmild6 514 595 IPR001650 -
Gabi2104g00006 921 SMART ultradead3 281 477 IPR014001 -
Gabi2104g00006 921 NCBIfam RecQ family ATP-dependent DNA helicase 275 622 IPR004589 GO:0004386|GO:0006310
Gabi2104g00006 921 Pfam DEAD/DEAH box helicase 287 449 IPR011545 GO:0003676|GO:0005524
Gabi2104g00006 921 MobiDBLite consensus disorder prediction 1 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2104g00006 Gabi-Chr2104 44336 57170 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2104g00006 504 627 Eukaryotic Initiation Factors Gene Family AT3G19760 30.952 1.51e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2104g00006 K10730 - gmx:100811214 1283.09