Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi20g00006 ATGCATGTGAATCATGTTAGCAATTATAGCTTTGGGGAAGCTGAGGCATTAACTGATGAGATTGAAGAAGAGTTTCAGCATGTTGGGGAGGTTTTGAGGATCCGAAACGTTCTGCTTAACTTTAAAGAAGAGTCTGACTCTGTGTTATTTGAGTCATTGAGGAGGCTCCAGCTGATGGAACTCACTGTGGATCTTCTAGAGGCAACTGAGATTGGAAAGGCTGTCAATCCTCTCCGAAAGCATGGATCAAAGGATATTAGTCAACTCGCACCACTCATCTACCATTTCTTTCCAGCAATACTCTTATTGATATCCTTTGATCCATGCTTTCGGAGAGGATTGACAGCCTTTCCAATCTCAGTTGCCTCTAGAAGAATCCACAATCCACCCTTTCACCCCCCCAAAATCGATGGCATGGATGATTATGGAAATCCTCGACAGAGTGGACAATACAACAGAAACTGTGAAAATGGGAGAAAGCCAGCTTTGGACAGTCAAGTTGTAGAAAGGAGGAAATCTGAGGCTTCCATTGAGCCATCTATCACTGCCAAGGACAGTAAGAGTCAGCAACCAAGGAAAAATGAGGTTGTTGTGAGGCGAAATAAACCAGAAACTGCTGATAATGGCCCTGTCAGACCCCCAAAATCAACTATGCAGCGAAAAAGCAATATAGAGCCAAAGAAGCAGCCAAAAATAGAGAACAATACAATCCCAAAGAAACCTCCCGATTAGAAAGATAAATCCAAGTTTTCAGATGAAGCTGCAGTCCAAGTAAAGTTAGAGGCCACTAAGAGGAAACTTCATGAGCGTTATCAACAAGTTGAAAATGCTAAGAGGCAGAGGACAATACAAGTTCTAGAA 861 0.4251 MHVNHVSNYSFGEAEALTDEIEEEFQHVGEVLRIRNVLLNFKEESDSVLFESLRRLQLMELTVDLLEATEIGKAVNPLRKHGSKDISQLAPLIYHFFPAILLLISFDPCFRRGLTAFPISVASRRIHNPPFHPPKIDGMDDYGNPRQSGQYNRNCENGRKPALDSQVVERRKSEASIEPSITAKDSKSQQPRKNEVVVRRNKPETADNGPVRPPKSTMQRKSNIEPKKQPKIENNTIPKKPPDXKDKSKFSDEAAVQVKLEATKRKLHERYQQVENAKRQRTIQVLE 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi20g00006 287 Coils Coil 257 280 - -
Gabi20g00006 287 Pfam TFIIS helical bundle-like domain 53 90 IPR017923 -
Gabi20g00006 287 SMART TFS2_5 28 99 IPR003617 GO:0005634
Gabi20g00006 287 ProSiteProfiles TFIIS N-terminal domain profile. 29 104 IPR017923 -
Gabi20g00006 287 MobiDBLite consensus disorder prediction 127 252 - -
Gabi20g00006 287 MobiDBLite consensus disorder prediction 221 252 - -
Gabi20g00006 287 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 24 94 IPR035441 -
Gabi20g00006 287 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 4 90 IPR044805 -
Gabi20g00006 287 CDD TFIIS_I 30 95 - -
Gabi20g00006 287 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 20 95 IPR035441 -
Gabi20g00006 287 MobiDBLite consensus disorder prediction 163 178 - -
Gabi20g00006 287 MobiDBLite consensus disorder prediction 188 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi20g00006 Gabi-Chr20 118065 119250 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Gabi20g00006 Med26 2.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi20g00006 - - gmx:100775579 290.041