Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi20g00004 ATGTCTTCCTCTCTCATCTGTAGGAAGAGAAAACGATGCCCCAAGGTTTTCAGGTTTCACTCCTTCGCTGACCATGGTTGCCCCATCGCACCTTCTGGTCCCTTCCGCGACAACGTTCGCTTATTTCTTCAAGAAGCGGCACAACCCCAAGATTACACTGTCTCTGGCAACCCCCTATGGTGCACCCTTCTCATTCTCAACCGCGACAACACTAACCTAACGGCTCCTCTCTACACCATCGAAGAGGACGTTTCCCGTTCTTCCAATCCCTTCTGCGATCATTGCCGCTGTGTAGGTTGGAGCGGCCATTATGTATCAAAGAGAAGGTATCATTTCATAATCCCGATGGACAACGGGTGGCATAAACCCTTAAGTGAAGGTGCTCTTGATAATCAGAGTCATTTCTTGCATGGGGTTATTCACTGCAATGGATACGGCCATTTGCTTCGTCTCAATGGCGTAGAAGGGGGTTCTAGAGTTCTCAGTGGGAGAGAGATCATGGATCTCTGGGACAGGATCTGCATCAATCTTGGAGCCAGGAAAATTACAGTGGAAGATGCCTCAAGGAAGAGGTCTATGGATCTTCGGTTACTTCATGGAGTTGCTTATGGGCACTCTTGGTATGGTCGGTGGGGCTATAGATTTTGCCGTGGAAGCTTCGGTGTAACTGAGCAAAATTACTATGAAGCAATTGAGGCTCTTGGTACTTTGGAGCTTGAAAAGATTGTAAAAGATTTCAGCGAGACAAAGTGCCACAAAAAAATCAAACAAATGATTCGCTGCTACAGAGACACGAGTGAAGCTCAGATTATCACAATCAGAGATCTTCTCAGGTTTATGCTTACTGTCAGGTCTCGTGCTCCTGTTTCTAAGATAGCAGAAATTTCTTCTGTTGCTCCTCTCATGAAGGAAAAATCTATGGATGGCAGGTGGCCAACACGGAGACTAGAGTTTGCAGCTCAAGTGATTGTTGATGTACTTAAAGAGCACAAGGCTGCCCAATCAGGTTCTTGTGGGATGACAAGACAAGATGTGAGAGATGCAGCTCGGCTCCATATTGGTGATACGGGCTTACTGGATTATGTGCTGAAATCACTTAACAACGTGATTGTTGGAAATTTTATTGTTCTTCGCAAGGTGAACCCATCAACTCGGATCCTGGAATATACTATTGATGAGCTTGGCAAGGGGTTCAAAGCCCCTGAACTGGAGTCTGGGGTAATGCCTGTTGTAGATCCCCAAGTAGAATCATCTTGGGTTCCTGGTAATGATGTCTACAATGATGTGTTTTATCTGTACAAAAATGTACTATTAGGCTACCTTGATTCAGAACCAGTGGACTTGGCAGCTCGGACAATTCTTGACAGCAGGCACTTCGTGAAGGAGTGGGCTTTAAGGGATGACATGGAGCAGGTATTGACATGCATCTGCCACTTGAAGCTAAATTTTGTGGACACTGAATCTGAGTTGAAAGGGCTACCTTGTGGCGAGATTGTTATGGTTCCTCTGCAAGCAACAGTTGGAGACTTGAAGCAAGCTGCTGAGGTTGCTCTGAGGGATACTTACTGCATTGCAGAAAGACTTATAGTGACAGAAATTGCAGAATTGATGAATGCAAGTGATGAGGAAGTCCTTTTTGGACTAATCCAGTCTGGTGTGGAACTTTCTGTTAGGTGTATTGCCATAGATTCGTGCACTCCATTGAAGTACCAGGGAGGGTTTGACAATTCGAAGGTGAGGTGTGAATGTGGTGCTCGTGACGATGATGGTGAAAGAATGGTGGCTTGTGACATTTGTGAAGTGTGGAAGCATACACGCTGCTGTGGAATCGATGACTCAGAGACGGTGCCACCATTTTTTGCATGCCCTGGCTGTTGGGATTCACTTGTACCCCCAAGGATTGAATCCGGCTTCAGTCTGAATTGTGCTGATGATTTTCTGATTCCAAGGGTCTATAGTCTCTAG 1965 0.4585 MSSSLICRKRKRCPKVFRFHSFADHGCPIAPSGPFRDNVRLFLQEAAQPQDYTVSGNPLWCTLLILNRDNTNLTAPLYTIEEDVSRSSNPFCDHCRCVGWSGHYVSKRRYHFIIPMDNGWHKPLSEGALDNQSHFLHGVIHCNGYGHLLRLNGVEGGSRVLSGREIMDLWDRICINLGARKITVEDASRKRSMDLRLLHGVAYGHSWYGRWGYRFCRGSFGVTEQNYYEAIEALGTLELEKIVKDFSETKCHKKIKQMIRCYRDTSEAQIITIRDLLRFMLTVRSRAPVSKIAEISSVAPLMKEKSMDGRWPTRRLEFAAQVIVDVLKEHKAAQSGSCGMTRQDVRDAARLHIGDTGLLDYVLKSLNNVIVGNFIVLRKVNPSTRILEYTIDELGKGFKAPELESGVMPVVDPQVESSWVPGNDVYNDVFYLYKNVLLGYLDSEPVDLAARTILDSRHFVKEWALRDDMEQVLTCICHLKLNFVDTESELKGLPCGEIVMVPLQATVGDLKQAAEVALRDTYCIAERLIVTEIAELMNASDEEVLFGLIQSGVELSVRCIAIDSCTPLKYQGGFDNSKVRCECGARDDDGERMVACDICEVWKHTRCCGIDDSETVPPFFACPGCWDSLVPPRIESGFSLNCADDFLIPRVYSL 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi20g00004 654 CDD PHD_MMD1_like 581 625 - -
Gabi20g00004 654 SUPERFAMILY FYVE/PHD zinc finger 573 631 IPR011011 -
Gabi20g00004 654 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 8 633 - -
Gabi20g00004 654 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 570 631 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi20g00004 Gabi-Chr20 103543 108840 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi20g00004 6 631 PHD Transcription Factor Family AT5G22260 34.168 2.63e-122 376
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi20g00004 K26271 - gmx:100797388 938.332