Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2093g00023 ATGAGGGGTAGAAGCTACAGTTACAGTCCCTCACCTCCAAGGCGTTACAGCCGAAGAAGGCGCAATCCTAGCCCTAGGGGTCGTTACGGAGGACGTGATAGGGATTTGCCAACAAGTCTACTGGTTCGGAACCTCCATAAAGATTGCAGGGGGGAAGATCTGCGTGCCCCATTTAGCCACTTTGGTCCTCTCAAGGATGTTTACCTGCCTCGAGATTATTATACTGGGGAGCCAAGAGGCTTTGGGTTTGTTCAATATGTAGACCCAGCTGATGCTGCAGATGCAAAATATCATATGGATGGTCAAATTCTTCTAGGTCGTGAGTTAACTGTGGTGTTTGCTGAAGAAAACAGAAAGAAACCTGCAGAAATGAGAGCAAGAGAACGTGGGAGGGATCGGTCATATGATTATAGGAGATCTCCACTGCGTCAGTCTCAATCGCCTCGGTATGCACGAACCTATTCACCTGATTCAGACTATTCACTTTCCCCAAGACGAAGGAGATATTCAAGGTCAATCTCACCAAGAGATAGAAGGTACAGGGATCGATCATACTCTAGATCACCTTATGGATCAAGGGGCCGCAGTCGAAGCAGGAGTTACAGCAGGAGCATGAGCAGAAGTCCAGGTTACTCTAGGTGA 642 0.4798 MRGRSYSYSPSPPRRYSRRRRNPSPRGRYGGRDRDLPTSLLVRNLHKDCRGEDLRAPFSHFGPLKDVYLPRDYYTGEPRGFGFVQYVDPADAADAKYHMDGQILLGRELTVVFAEENRKKPAEMRARERGRDRSYDYRRSPLRQSQSPRYARTYSPDSDYSLSPRRRRYSRSISPRDRRYRDRSYSRSPYGSRGRSRSRSYSRSMSRSPGYSR 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2093g00023 213 SMART rrm1_1 39 112 IPR000504 GO:0003723
Gabi2093g00023 213 MobiDBLite consensus disorder prediction 140 160 - -
Gabi2093g00023 213 MobiDBLite consensus disorder prediction 1 36 - -
Gabi2093g00023 213 MobiDBLite consensus disorder prediction 189 213 - -
Gabi2093g00023 213 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 109 IPR000504 GO:0003723
Gabi2093g00023 213 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 37 207 - -
Gabi2093g00023 213 MobiDBLite consensus disorder prediction 119 213 - -
Gabi2093g00023 213 MobiDBLite consensus disorder prediction 119 139 - -
Gabi2093g00023 213 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 116 IPR000504 GO:0003723
Gabi2093g00023 213 SUPERFAMILY RNA-binding domain, RBD 38 139 IPR035979 GO:0003676
Gabi2093g00023 213 Gene3D - 32 154 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2093g00023 Gabi-Chr2093 285167 291786 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2093g00023 38 156 Eukaryotic Initiation Factors Gene Family AT2G36660 28.571 1.09e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2093g00023 K12900 - jre:108985117 221.861