Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gabi2090g00008 | ATGGGTTTTTGTGGGTTTTTCATTTACTGGGAAGAAACTGTGGAGGAGAATTCCACCGGTGGTAGTGACCCACTTTCGGTTTCTTTATATCAGATGGATTTGGATAGAACCCTGTTTCTATTAAGATCATATCTTCGGATTCGCATCCAGAAGATTGAAAAGTACATGTTCCACATCCAAAAAACTGATGAGCTTTGGAACAGGCTATCTAAAGAGGAGAAAAATTTCACTAGGAGGTGTACAAATGACCTAAAACAACATCTGGAGGAGAATGTTCTATCAAAATTGCCTGAAAATTATCAATCTCTTTTGAAGCAATCTGTAACAAGTGACGAGGATGACATGGTCCCAGAACCAAGACTAGACACATTTGTTTTATGTAGAAGTAAAGAATATCTGACAGGCATTCAACTTGAAGATGGACCTGTTGATGACAGGTCGAAGCTCTTTGAAATGGAGCCTGATGTCCTCTACTTCATATGTTACAAATCCATAAAGCCACTTGTAGAGAGTGGTAAAATTGATCTGCTCTGA | 534 | 0.3876 | MGFCGFFIYWEETVEENSTGGSDPLSVSLYQMDLDRTLFLLRSYLRIRIQKIEKYMFHIQKTDELWNRLSKEEKNFTRRCTNDLKQHLEENVLSKLPENYQSLLKQSVTSDEDDMVPEPRLDTFVLCRSKEYLTGIQLEDGPVDDRSKLFEMEPDVLYFICYKSIKPLVESGKIDLL | 177 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gabi2090g00008 | 177 | Gene3D | - | 8 | 167 | - | - | |
| Gabi2090g00008 | 177 | Pfam | GINS complex protein | 23 | 74 | IPR021151 | - | |
| Gabi2090g00008 | 177 | PANTHER | SLD5 PROTEIN | 11 | 177 | IPR008591 | GO:0006261 | |
| Gabi2090g00008 | 177 | CDD | GINS_A_Sld5 | 11 | 93 | IPR038749 | - | |
| Gabi2090g00008 | 177 | SUPERFAMILY | PriA/YqbF domain | 121 | 177 | - | - | |
| Gabi2090g00008 | 177 | PIRSF | GINS_Sld5 | 9 | 177 | IPR008591 | GO:0006261 | |
| Gabi2090g00008 | 177 | CDD | GINS_B_Sld5 | 119 | 177 | IPR031633 | - | |
| Gabi2090g00008 | 177 | FunFam | DNA replication complex GINS protein SLD5 | 8 | 167 | - | - | |
| Gabi2090g00008 | 177 | SUPERFAMILY | GINS helical bundle-like | 17 | 105 | IPR036224 | - | |
| Gabi2090g00008 | 177 | Pfam | DNA replication complex GINS protein SLD5 C-terminus | 119 | 177 | IPR031633 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gabi2090g00008 | Gabi-Chr2090 | 169590 | 172275 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gabi2090g00008 | 11 | 115 | Core DNA Replication Machinery Family | AT5G49010 | 62.857 | 3.90e-40 | 132 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gabi2090g00008 | K10735 | - | qsa:O6P43_008399 | 286.189 |