Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2090g00007 ATGGCTTCAAGCTCAGTGGATGGAGGATCAACGCTACCAACAGAGGATTATGATTTTTTGATTTCAACCACTGACGTTGTGCTTCTCAAGCGAGCTTGGCGTAACGAGAAGGCAGCCCCCGAGATTCTTCGCTTTGAATCTGATTTGATTTCCCGTGTCAGAGAACAGATTCAATTGGTGGAAGAAACTGTGGAGGAGAATTCCACCGGTGGTAGTGACCCACTTTCGGTTTCTTTATATCAGATGGATTTGGATAGAACCCTGTTTCTATTAAGATCATATCTTCGGATTCGCATCCAGAAGATTGAAAAGTACATGTTCCACATCCAAAAAACTGATGAGCTTTGGAACAGGCTATCTAAAGAGGAGAAAAATTTCACTAGGAGGTGTACAAATGACCTAAAACAACATCTGGAGGAGAATGTTCTATCAAAATTGCCTGAAAATTATCAATCTCTTTTGAAGCAATCTGTAACAAGTGACGAGGATGACATGGTCCCAGAACCAAGACTAGACACATTTGTTTTATGTAGAAGTAAAGAATATCTGACAGGCATTCAACTTGAAGATGGACCTGTTGATGACAGGTCGAAGCTCTTTGAAATGGAGCCTGATGTCCTCTACTTCATATGTTACAAATCCATAAAGCCACTTGTAGAGAGTGGTAAAATTGATCTGCTCTGA 684 0.4079 MASSSVDGGSTLPTEDYDFLISTTDVVLLKRAWRNEKAAPEILRFESDLISRVREQIQLVEETVEENSTGGSDPLSVSLYQMDLDRTLFLLRSYLRIRIQKIEKYMFHIQKTDELWNRLSKEEKNFTRRCTNDLKQHLEENVLSKLPENYQSLLKQSVTSDEDDMVPEPRLDTFVLCRSKEYLTGIQLEDGPVDDRSKLFEMEPDVLYFICYKSIKPLVESGKIDLL 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2090g00007 227 FunFam DNA replication complex GINS protein SLD5 12 217 - -
Gabi2090g00007 227 PIRSF GINS_Sld5 1 227 IPR008591 GO:0006261
Gabi2090g00007 227 SUPERFAMILY GINS helical bundle-like 22 155 IPR036224 -
Gabi2090g00007 227 SUPERFAMILY PriA/YqbF domain 171 227 - -
Gabi2090g00007 227 CDD GINS_A_Sld5 25 143 IPR038749 -
Gabi2090g00007 227 Gene3D - 14 217 - -
Gabi2090g00007 227 Pfam DNA replication complex GINS protein SLD5 C-terminus 169 227 IPR031633 -
Gabi2090g00007 227 CDD GINS_B_Sld5 169 227 IPR031633 -
Gabi2090g00007 227 PANTHER SLD5 PROTEIN 14 227 IPR008591 GO:0006261
Gabi2090g00007 227 Pfam GINS complex protein 55 124 IPR021151 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2090g00007 Gabi-Chr2090 169590 172583 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2090g00007 1 165 Core DNA Replication Machinery Family AT5G49010 63.030 5.62e-68 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2090g00007 K10735 - qsa:O6P43_008399 369.777