Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2090g00001 ATGGTTTTTACATCCATACCAGCAACTTATCTGGATGCAGCCAACTGGCAGCAACAGCAACAAAATCATCAACCGGGAAACGGTGGTTCAACCTCTCAGCAGGTGCTTCCGCCGCCGCCACCAGCTCAGCCTCATGCAGCCGGCGGCTCCAGCTCGATCAGGCCGGGGTCAATGGCTGATAGGGCAAGGATGGCCAACATACCTATGCCGGAGGCTGCACTGAAGTGTCCACGATGTGAATCATCCAACACCAAATTTTGCTATTTCAACAACTACAGTCTCTCTCAGCCACGCCACTTCTGCAAGACCTGTAGAAGGTACTGGACTAGAGGCGGTGCCCTAAGGAGCGTCCCCGTGGGCGGCGGCTGCCGGAGGAACAAGAGAAGTAAAGGAAGCAGCAGCTCCAAGTCCCCGGCGAGTTCGGATCGTCAAACTGGAAGTGCTTGTTCTACCAACTCAATCTCTTCTGCTACTGCAGCTGATATAATAGGCTTTGCACCCCAGATGCCACCACCGAGGTTTATGACTCCAATGCATCAATTCACTGATTTTGGAGTTGGAGATATGGGCTTAAACTATGGCCCAAATTACAGCACTATTTCAGGTTCAATGGGAGGAGTAGGGGACTTAAGTTTCCATATAGGAAATGCTTTAGGTGGACCAAATGGTTTTGAGCAATGGAGGATGGCGCAAACACAACAATTTCCCTTCTTGGCTGGTTTGGAAAGTTCACAAGCTGGTTTGTACCCTTTTGAAGATAGTGCTAATGGATATGGTGTTGGTGGGTTGAGTCATCTCAGGCCAAAGGTTTCAACTTCTGCGGTTATATCTCAGCTTGCTTCAGTGAAAATGGAAGATAGTAAGCAACATAATTTGTCAAACCAGTTCTTGGGAAGCAATAATCAAGCAAGTGAACAATATTGGACTACTGGTAATCCTCAATTATGGACAGATATTTCGGGTTTTAGTTCATCTTCCACTACTAGTAACCAGCCATAG 999 0.4785 MVFTSIPATYLDAANWQQQQQNHQPGNGGSTSQQVLPPPPPAQPHAAGGSSSIRPGSMADRARMANIPMPEAALKCPRCESSNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRSKGSSSSKSPASSDRQTGSACSTNSISSATAADIIGFAPQMPPPRFMTPMHQFTDFGVGDMGLNYGPNYSTISGSMGGVGDLSFHIGNALGGPNGFEQWRMAQTQQFPFLAGLESSQAGLYPFEDSANGYGVGGLSHLRPKVSTSAVISQLASVKMEDSKQHNLSNQFLGSNNQASEQYWTTGNPQLWTDISGFSSSSTTSNQP 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2090g00001 332 MobiDBLite consensus disorder prediction 132 151 - -
Gabi2090g00001 332 Pfam Dof domain, zinc finger 73 128 IPR003851 GO:0003677|GO:0006355
Gabi2090g00001 332 ProSiteProfiles Zinc finger Dof-type profile. 74 128 IPR003851 GO:0003677|GO:0006355
Gabi2090g00001 332 MobiDBLite consensus disorder prediction 17 33 - -
Gabi2090g00001 332 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 36 239 IPR045174 GO:0003700|GO:0006355
Gabi2090g00001 332 MobiDBLite consensus disorder prediction 118 151 - -
Gabi2090g00001 332 MobiDBLite consensus disorder prediction 17 57 - -
Gabi2090g00001 332 ProSitePatterns Zinc finger Dof-type signature. 76 112 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2090g00001 Gabi-Chr2090 21421 22956 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2090g00001 1 302 C2C2-Dof Transcription Factor Family AT5G02460 40.476 1.15e-56 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gabi2090g00001 zf-Dof 5.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2090g00001 - - qsu:112030762 343.199