Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2085g00015 ATGACTTCTGCAAAAAACGTGGCAAACGCTGTTCGTGGCAAAACAGCAAGAGCCTGTGATAGCTGCATAAGAAAGCGAGCACGTTGGTACTGTGCTGCAGATGATGCTTTCCTCTGCGAAGCTTGTGACTCTTCTGTTCACTCAGCTAATTCATTGGCTCGTAGGCATGAACGTGTTCGCTTGAAAATGGCTTCGTGCAAGTCCTCTGATTGTGCTCCATCGTGGCACAGAGGCTTCACCAAAAGAGCTAGAACACCACGACATGGGAAGCACAATTCAAAAGCCAAGGCTAAGAACCCTTTCCATCTAGTACCCGAAGTGGTTTCAGATGATACAAATTCCCAAGAAGTGAGCGAGGAACAACTTCTTTATAGAGTACCCATTTTCGATCCCTTTGTAGCAGAGCTATGCACAACTCCATCTTATTCTGTGGCTTCGCCTGAAGCACTGGCAACAGTGGCTGGTTGTGCTCTTGAGGTTGAAAAAAAGGACATCAAAAATCATGGGGTGGAAAGCTTTAATGGGTTTCTTTCATCGGATATTGAACTTTCAGAGTTTGCTGCTGATGTTGAGAGCTTGCTGGGTAAGGGACTAGAGAATCAGTGCATGGGAATGGAAGAGTTGGGGCTAATTGATTGCAATGAAGAGGTTTCTTCGTGGGAGTGTTGTGTGGGTAGCGGAAAGGTGAAGGTGGAAGAGGATGAGAAGCCAGAAGAAGTGGTAGATGAGATTGAGAATATGGGTAGAGAACCTTTTGAATTGAGCTTTGATTATGATTACTCTTCTGTGCAAGCATGTGAAGAGGTGGAGGAGAAGGTTGCTTTGGATGTGACTAAAGATGTGATGAATGGTGGAGAACTCAAAGAGAATAATATAGCAAAAAGGAAGGTATTGTTGCAGTTAGATTATGAGGCAGTAATAGCTGCCTGGGCAAGCCAAAAATCTCCATGGATTACTGGTGATAAACCACACTTTATTCATGATCATTTCTGGCCTCACTGCATGGGAGCTTGTGGAATAGAGCTTCACCAGCAGTATGGTGAATTGGGTGGACTTTTTGTGTGTCATCCAGGAACAACAGATGGGGGAAGAGAAGCAAGGGTATCAAGATATAGGGAAAAGCGGAGGACAAGGTTGTTCTCGAAGAAAATAAGGTATGAAGTTCGAAAATTGAATGCAGAGAAGAGGCCCAGAATGAAGGGGAGGTTTGTAAAGAGGGCTTCCTTTGCAGCACCACCAACTATTCCTTTAATAAACAAATAA 1263 0.4426 MTSAKNVANAVRGKTARACDSCIRKRARWYCAADDAFLCEACDSSVHSANSLARRHERVRLKMASCKSSDCAPSWHRGFTKRARTPRHGKHNSKAKAKNPFHLVPEVVSDDTNSQEVSEEQLLYRVPIFDPFVAELCTTPSYSVASPEALATVAGCALEVEKKDIKNHGVESFNGFLSSDIELSEFAADVESLLGKGLENQCMGMEELGLIDCNEEVSSWECCVGSGKVKVEEDEKPEEVVDEIENMGREPFELSFDYDYSSVQACEEVEEKVALDVTKDVMNGGELKENNIAKRKVLLQLDYEAVIAAWASQKSPWITGDKPHFIHDHFWPHCMGACGIELHQQYGELGGLFVCHPGTTDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRASFAAPPTIPLINK 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2085g00015 420 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 9 408 - -
Gabi2085g00015 420 SMART bboxneu5 14 61 IPR000315 GO:0008270
Gabi2085g00015 420 ProSiteProfiles CCT domain profile. 364 406 IPR010402 GO:0005515
Gabi2085g00015 420 ProSiteProfiles Zinc finger B-box type profile. 14 61 IPR000315 GO:0008270
Gabi2085g00015 420 Pfam CCT motif 364 406 IPR010402 GO:0005515
Gabi2085g00015 420 CDD Bbox1_BBX-like 18 61 - -
Gabi2085g00015 420 Pfam B-box zinc finger 16 59 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2085g00015 Gabi-Chr2085 232679 234480 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2085g00015 5 406 C2C2-CO-like Transcription Factor Family AT1G25440 48.000 3.03e-105 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Gabi2085g00015 zf-B_box 1.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2085g00015 - - lang:109339476 532.332