Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2085g00014 ATGACTTCTGCAAAAAACGTGGCAAACGCTGTTCGTGGCAAAACAGCAAGAGCCTGTGATAGCTGCATAAGAAAGCGAGCACGTTGGTACTGTGCTGCAGATGATGCTTTCCTCTGCGAAGCTTGTGACTCTTCTGTTCACTCAGCTAATTCATTGGCTCGTAGGCATGAACGTGTTCGCTTGAAAATGGCTTCGTGCAAGTCCTCTGATTGTGCTCCATCGTGGCACAGAGGCTTCACCAAAAGAGCTAGAACACCACGACATGGGAAGCACAATTCAAAAGCCAAGGCTAAGAACCCTTTCCATCTAGTACCCGAAGTGGTTTCAGATGATACAAATTCCCAAGAAGTGAGCGAGGAACAACTTCTTTATAGAGTACCCATTTTCGATCCCTTTGTAGCAGAGCTATGCACAACTCCATCTTATTCTGTGGCTTCGCCTGAAGCACTGGCAACAGTGGCTGGTTGTGCTCTTGAGGTTGAAAAAAAGGACATCAAAAATCATGGGGTGGAAAGCTTTAATGGGTTTCTTTCATCGGATATTGAACTTTCAGAGTTTGCTGCTGATGTTGAGAGCTTGCTGGGTAAGGGACTAGAGAATCAGTGCATGGGAATGGAAGAGTTGGGGCTAATTGATTGCAATGAAGAGGTTTCTTCGTGGGAGTGTTGTGTGGGTAGCGGAAAGGTGAAGGTGGAAGAGGATGAGAAGCCAGAAGAAGTGGTAGATGAGATTGAGAATATGGGTAGAGAACCTTTTGAATTGAGCTTTGATTATGATTACTCTTCTGTGCAAGCATGTGAAGAGGTGGAGGAGAAGGTTGCTTTGGATGTGACTAAAGATGTGATGAATGGTGGAGAACTCAAAGAGAATAATATAGCAAAAAGGAAGGTATTGTTGCAGTTAGATTATGAGGCAGTAATAGCTGCCTGGGCAAGCCAAAAATCTCCATGGATTACTGGTGATAAACCACACTTTATTCATGATCATTTCTGGCCTCACTGCATGCAGGGAGCTTGTGGAATAGAGCTTCACCAGCAGTATGGTGAATTGGGTGGACTTTTTGTGTGTCATCCAGGAACAACAGATGGGGGAAGAGAAGCAAGGGTATCAAGATATAGGGAAAAGCGGAGGACAAGGTTGTTCTCGAAGAAAATAAGGTATGAAGTTCGAAAATTGAATGCAGAGAAGAGGCCCAGAATGAAGGGGAGGTTTGTAAAGAGGGCTTCCTTTGCAGCACCACCAACTATTCCTTTAATAAACAAATAA 1266 0.4431 MTSAKNVANAVRGKTARACDSCIRKRARWYCAADDAFLCEACDSSVHSANSLARRHERVRLKMASCKSSDCAPSWHRGFTKRARTPRHGKHNSKAKAKNPFHLVPEVVSDDTNSQEVSEEQLLYRVPIFDPFVAELCTTPSYSVASPEALATVAGCALEVEKKDIKNHGVESFNGFLSSDIELSEFAADVESLLGKGLENQCMGMEELGLIDCNEEVSSWECCVGSGKVKVEEDEKPEEVVDEIENMGREPFELSFDYDYSSVQACEEVEEKVALDVTKDVMNGGELKENNIAKRKVLLQLDYEAVIAAWASQKSPWITGDKPHFIHDHFWPHCMQGACGIELHQQYGELGGLFVCHPGTTDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRASFAAPPTIPLINK 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2085g00014 421 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 9 409 - -
Gabi2085g00014 421 SMART bboxneu5 14 61 IPR000315 GO:0008270
Gabi2085g00014 421 ProSiteProfiles Zinc finger B-box type profile. 14 61 IPR000315 GO:0008270
Gabi2085g00014 421 Pfam B-box zinc finger 16 59 IPR000315 GO:0008270
Gabi2085g00014 421 CDD Bbox1_BBX-like 18 61 - -
Gabi2085g00014 421 Pfam CCT motif 365 407 IPR010402 GO:0005515
Gabi2085g00014 421 ProSiteProfiles CCT domain profile. 365 407 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2085g00014 Gabi-Chr2085 232679 234480 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2085g00014 5 407 C2C2-CO-like Transcription Factor Family AT1G25440 47.765 1.62e-105 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Gabi2085g00014 zf-B_box 1.9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2085g00014 - - lang:109339476 527.709