Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2085g00009 ATGCTAATTTGGAATCTCTACAAGCCATTTAGAAGGAGACCAGAAGGGAACCCATTAGATCTCAACAATATTCCTGATGAACACTCTGGAGATGATAAACATGTCCTCGAAGATAGCTCCTCATCTGGATTCAAAAGCGGCGTGAAGGATTCAAAAGACGAGTGTGGGAAGGTCTACGAGTGCAGATTTTGTTCCCTTAAGTTCTGCAAGTCTCAGGCACTTGGGGGACACATGAACCGCCACCGTCAAGAAAGGGAAACAGAGGCTCTGAACCAAGCTCGTCAGCTACTCTACCATAACGATCATAACCTACAAACCCAAGGTGCCCCCCACTTAGGATACGGCAAACCAGTAGCATCAGGGAACTTTCATCCAATAAGTAACATGGGAGACCCAACAATGCGTATGAGATTCCCAGGACACGTGTCTGGTTCATTCTCAAACCACATGCCAGAACCTCTTGTTCCTCCACAACAACAATACTTATATGGCACTGCCCCTTCACGGCGCTTCTCTTTTCCGTCACACTATTCCCAACATCCTGTGAACGATTACTATGTAGGTCATGTCCTTAGTGGCAACCTCAACTATGAGGCAACAGAGTCTGTTTACACTTGCATAGGGGCACCTGTAGGACAAGCATTCGCGGGTAGTGGTAACGACAGGTCACTGCACAATGAAGATGATGAAGGGTTGAATTGGGGAAGGAGCTATTCAGGAACACAGAAGCAGCGTTCAATAGGTTTCAAGATAGGTTCTAATTAA 765 0.4627 MLIWNLYKPFRRRPEGNPLDLNNIPDEHSGDDKHVLEDSSSSGFKSGVKDSKDECGKVYECRFCSLKFCKSQALGGHMNRHRQERETEALNQARQLLYHNDHNLQTQGAPHLGYGKPVASGNFHPISNMGDPTMRMRFPGHVSGSFSNHMPEPLVPPQQQYLYGTAPSRRFSFPSHYSQHPVNDYYVGHVLSGNLNYEATESVYTCIGAPVGQAFAGSGNDRSLHNEDDEGLNWGRSYSGTQKQRSIGFKIGSN 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2085g00009 254 MobiDBLite consensus disorder prediction 15 50 - -
Gabi2085g00009 254 PANTHER ZINC FINGER PROTEIN JAGGED 39 228 IPR045320 GO:0003700
Gabi2085g00009 254 MobiDBLite consensus disorder prediction 220 239 - -
Gabi2085g00009 254 ProSiteProfiles Zinc finger C2H2 type domain profile. 59 86 IPR013087 -
Gabi2085g00009 254 MobiDBLite consensus disorder prediction 25 39 - -
Gabi2085g00009 254 SUPERFAMILY beta-beta-alpha zinc fingers 55 97 IPR036236 -
Gabi2085g00009 254 Gene3D Classic Zinc Finger 39 110 - -
Gabi2085g00009 254 FunFam Zinc finger protein STAMENLESS 1 37 107 - -
Gabi2085g00009 254 ProSitePatterns Zinc finger C2H2 type domain signature. 61 81 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2085g00009 Gabi-Chr2085 170415 175043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2085g00009 12 212 C2H2 Transcription Factor Family AT1G13400 42.180 1.07e-27 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi2085g00009 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2085g00009 - - aprc:113871902 293.893