Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2085g00002 ATGCCTTTCTCCAATGACAACCTATTGGATCAACAGCCTAAGCTGCATGCTGTTCTGACCTTTACTCAGCCTGAGAATCACGCAAATCCTATCACACTGATTCCTTCATCAGCCTCTGCATACACTACCAGATATGATCATGAACAAGCAGAGACCATGCTCGCATCAGAAAGCTTAGGGGATTTTTCTCCTCCATACACTGTAGCTGGTTATTCTGAAAAGAATAAGAATCTGGTTGGAAACAAAAGGAAGAGAAACAATGACAGGCTTAAAGAGAAACAAAATGGAGTCATCCTTGTAAGGGCAAAAAGAGGCCAAGCAACTGATAGCCACAGTTTAGCAGAAAGGGTGAGAAGAGAGAAAATCAATGAGAAGATGAGGTGTTTGCAGGACTTGGTTCCAGGGTGTTATAAGGCAATGGGAATGGCAGTCATGTTAGATGTGATAATAGATTATGTTCAATCACTGCAGCAGCAAATTGAGTTTCTATCCATGAAGCTTTCAGCAGCGAGTATGTATTTTGATTTGACCACTTTAGAGATGGATGCCAGCGAAACCATGCAGGAATACCGGCACCCATGA 582 0.4244 MPFSNDNLLDQQPKLHAVLTFTQPENHANPITLIPSSASAYTTRYDHEQAETMLASESLGDFSPPYTVAGYSEKNKNLVGNKRKRNNDRLKEKQNGVILVRAKRGQATDSHSLAERVRREKINEKMRCLQDLVPGCYKAMGMAVMLDVIIDYVQSLQQQIEFLSMKLSAASMYFDLTTLEMDASETMQEYRHP 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2085g00002 193 SMART finulus 112 162 IPR011598 GO:0046983
Gabi2085g00002 193 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 71 178 IPR024097 GO:0006355
Gabi2085g00002 193 Gene3D - 102 175 IPR036638 GO:0046983
Gabi2085g00002 193 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 106 156 IPR011598 GO:0046983
Gabi2085g00002 193 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 104 174 IPR036638 GO:0046983
Gabi2085g00002 193 Pfam Helix-loop-helix DNA-binding domain 110 157 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2085g00002 Gabi-Chr2085 43184 44588 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2085g00002 92 188 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G25330 75.258 5.45e-49 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi2085g00002 HLH 7.9e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2085g00002 - - aprc:113869931 253.832