Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2084g00005 ATGGCTTCCACTTCCTCTTATCCAAGCAAAGCCGAAGTTGGTGGCGGTGGCAGTGACCGTGCCGAGATTTCGGAAGCAGCGGTGGCGAACGATGAGCTATTACTATACAGGGGATTTAAGAAAGCGAAGAAAGAGAGAGGAAGCACTGCGAAGGAGCGCATCAGTAAGATGCCACCTTGTGCTGCCGGCAAACGCAGTTCCATATACCGCGGCGTCACCAGGCATAGATGGACTGGTCGTTATGAAGCACATCTTTGGGATAAAAGTACATGGAACCAGAATCAGAATAAGAAAGGAAAGCAAGTTTACTTGGGGGCATATGATGATGAAGAGGCTGCAGCTAGAGCATATGACCTTGCTGCTCTGAAATACTGGGGTCCGGGTGCTCTTATAAACTTTCCAGTGACTGATTATGCAAGAGATCTTGAAGAAATGCAGAATATTTCAAGAGAGGAATACCTTGCATCTTTGCGGCGGAAGAGCAGCGGTTTTTCTAGAGGAGTATCCAAATATCGGGGACTCTCTAGCCAATGGGAGCCATCATATGGTCGTGTGGCTGGATCTAACTACTTCAATAGTATATATTATGGTGATGATGATTCAGCTGCAGAAACTGAATCTGTAAGTGGTTTCTGCATAGAAAGAAAGATTGATTTGACAAGTTACATCAAGTGGTGGGGGTCTAATAAAAGTCGACAACCTGATGCCGGAACAAGATTATCAGATGAAAAAAAGCATGGTCTTGCTGGTGATATTTTCTGTGAAATCAAAGCATTGGAAAATAACGTCCAACCTTCAGAACCATACCAATTGCCAGAGTTAGGCATGCCCCATGACAAGAAAAAACATAAACGCTCTTCTGTCTCTGCTTTAAGTATCTTGTCACAATCAGCTGCTTACAAGAACTTGCAAGAGAAAGCATCAAAGAAACAGGAAACTTGCCATGATAATGACGAGAATGAAAATAAGAATACCATCAATAAGTTGGACCATGGTAAGGCAGCTGAGAAATCATCCAATCATGATGGTGGCAATGAAAGACTTGACATTGCAATGGGAATGAGTGGATCACTACCACTTCAAAGAAATGTTTATCCACTGACTCCATTATTGTCTTCACCACTTTTTACAGCCTACAGTACTGTTGATCCCTTGGTAGATCCTGTTATCTGGACGCCTCTTGTTCCTGTACTTCCTGCTGGCCCTTCCCGTATGACTGAGGTTACAAAGACTGAGACCAGTTCAACGTACAGCATTTTTCAGCCAGAGGAGTGA 1275 0.4376 MASTSSYPSKAEVGGGGSDRAEISEAAVANDELLLYRGFKKAKKERGSTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQVYLGAYDDEEAAARAYDLAALKYWGPGALINFPVTDYARDLEEMQNISREEYLASLRRKSSGFSRGVSKYRGLSSQWEPSYGRVAGSNYFNSIYYGDDDSAAETESVSGFCIERKIDLTSYIKWWGSNKSRQPDAGTRLSDEKKHGLAGDIFCEIKALENNVQPSEPYQLPELGMPHDKKKHKRSSVSALSILSQSAAYKNLQEKASKKQETCHDNDENENKNTINKLDHGKAAEKSSNHDGGNERLDIAMGMSGSLPLQRNVYPLTPLLSSPLFTAYSTVDPLVDPVIWTPLVPVLPAGPSRMTEVTKTETSSTYSIFQPEE 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2084g00005 424 PRINTS Ethylene responsive element binding protein signature 69 80 IPR001471 GO:0003700|GO:0006355
Gabi2084g00005 424 PRINTS Ethylene responsive element binding protein signature 116 136 IPR001471 GO:0003700|GO:0006355
Gabi2084g00005 424 FunFam AP2-like ethylene-responsive transcription factor 67 136 - -
Gabi2084g00005 424 ProSiteProfiles AP2/ERF domain profile. 68 134 IPR001471 GO:0003700|GO:0006355
Gabi2084g00005 424 MobiDBLite consensus disorder prediction 1 20 - -
Gabi2084g00005 424 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 40 324 - -
Gabi2084g00005 424 MobiDBLite consensus disorder prediction 268 288 - -
Gabi2084g00005 424 Pfam AP2 domain 68 126 IPR001471 GO:0003700|GO:0006355
Gabi2084g00005 424 SMART rav1_2 68 140 IPR001471 GO:0003700|GO:0006355
Gabi2084g00005 424 SUPERFAMILY DNA-binding domain 67 135 IPR016177 GO:0003677
Gabi2084g00005 424 MobiDBLite consensus disorder prediction 305 344 - -
Gabi2084g00005 424 MobiDBLite consensus disorder prediction 304 346 - -
Gabi2084g00005 424 Gene3D AP2/ERF domain 68 136 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2084g00005 Gabi-Chr2084 165505 171567 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2084g00005 27 408 AP2-EREBP Transcription Factor Family AT2G41710 63.333 1.98e-157 451
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi2084g00005 AP2 1.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2084g00005 K09285 - gmx:100814117 660.218