Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2084g00004 ATGGCTTCCACTTCCTCTTATCCAAGCAAAGCCGAAGTTGGTGGCGGTGGCAGTGACCGTGCCGAGATTTCGGAAGCAGCGGTGGCGAACGATGAGCTATTACTATACAGGGGATTTAAGAAAGCGAAGAAAGAGAGAGGAAGCACTGCGAAGGAGCGCATCAGTAAGATGCCACCTTGTGCTGCCGGCAAACGCAGTTCCATATACCGCGGCGTCACCAGGCATAGATGGACTGGTCGTTATGAAGCACATCTTTGGGATAAAAGTACATGGAACCAGAATCAGAATAAGAAAGGAAAGCAAGTTTACTTGGGGGCATATGATGATGAAGAGGCTGCAGCTAGAGCATATGACCTTGCTGCTCTGAAATACTGGGGTCCGGGTGCTCTTATAAACTTTCCAGTGACTGATTATGCAAGAGATCTTGAAGAAATGCAGAATATTTCAAGAGAGGAATACCTTGCATCTTTGCGGCGGTATGCTTTGTGCAGGAAGAGCAGCGGTTTTTCTAGAGGAGTATCCAAATATCGGGGACTCTCTAGCCAATGGGAGCCATCATATGGTCGTGTGGCTGGATCTAACTACTTCAATAGTATATATTATGGTGATGATGATTCAGCTGCAGAAACTGAATCTGTAAGTGGTTTCTGCATAGAAAGAAAGATTGATTTGACAAGTTACATCAAGTGGTGGGGGTCTAATAAAAGTCGACAACCTGATGCCGGAACAAGATTATCAGATGAAAAAAAGCATGGTCTTGCTGGTGATATTTTCTGTGAAATCAAAGCATTGGAAAATAACGTCCAACCTTCAGAACCATACCAATTGCCAGAGTTAGGCATGCCCCATGACAAGAAAAAACATAAACGCTCTTCTGTCTCTGCTTTAAGTATCTTGTCACAATCAGCTGCTTACAAGAACTTGCAAGAGAAAGCATCAAAGAAACAGGAAACTTGCCATGATAATGACGAGAATGAAAATAAGAATACCATCAATAAGTTGGACCATGGTAAGGCAGCTGAGAAATCATCCAATCATGATGGTGGCAATGAAAGACTTGACATTGCAATGGGAATGAGTGGATCACTACCACTTCAAAGAAATGTTTATCCACTGACTCCATTATTGTCTTCACCACTTTTTACAGCCTACAGTACTGTTGATCCCTTGGTAGATCCTGTTATCTGGACGCCTCTTGTTCCTGTACTTCCTGCTGGCCCTTCCCGTATGACTGAGGTTACAAAGACTGAGACCAGTTCAACGTACAGCATTTTTCAGCCAGAGGAGTGA 1290 0.438 MASTSSYPSKAEVGGGGSDRAEISEAAVANDELLLYRGFKKAKKERGSTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQVYLGAYDDEEAAARAYDLAALKYWGPGALINFPVTDYARDLEEMQNISREEYLASLRRYALCRKSSGFSRGVSKYRGLSSQWEPSYGRVAGSNYFNSIYYGDDDSAAETESVSGFCIERKIDLTSYIKWWGSNKSRQPDAGTRLSDEKKHGLAGDIFCEIKALENNVQPSEPYQLPELGMPHDKKKHKRSSVSALSILSQSAAYKNLQEKASKKQETCHDNDENENKNTINKLDHGKAAEKSSNHDGGNERLDIAMGMSGSLPLQRNVYPLTPLLSSPLFTAYSTVDPLVDPVIWTPLVPVLPAGPSRMTEVTKTETSSTYSIFQPEE 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2084g00004 429 MobiDBLite consensus disorder prediction 309 355 - -
Gabi2084g00004 429 FunFam AP2-like ethylene-responsive transcription factor 67 136 - -
Gabi2084g00004 429 ProSiteProfiles AP2/ERF domain profile. 68 134 IPR001471 GO:0003700|GO:0006355
Gabi2084g00004 429 MobiDBLite consensus disorder prediction 310 349 - -
Gabi2084g00004 429 SUPERFAMILY DNA-binding domain 67 135 IPR016177 GO:0003677
Gabi2084g00004 429 PRINTS Ethylene responsive element binding protein signature 116 136 IPR001471 GO:0003700|GO:0006355
Gabi2084g00004 429 PRINTS Ethylene responsive element binding protein signature 69 80 IPR001471 GO:0003700|GO:0006355
Gabi2084g00004 429 SMART rav1_2 68 140 IPR001471 GO:0003700|GO:0006355
Gabi2084g00004 429 Pfam AP2 domain 68 126 IPR001471 GO:0003700|GO:0006355
Gabi2084g00004 429 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 40 329 - -
Gabi2084g00004 429 Gene3D AP2/ERF domain 68 136 IPR036955 GO:0003700|GO:0006355
Gabi2084g00004 429 MobiDBLite consensus disorder prediction 273 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2084g00004 Gabi-Chr2084 165505 171567 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2084g00004 27 413 AP2-EREBP Transcription Factor Family AT2G41710 62.532 7.49e-155 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi2084g00004 AP2 1.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2084g00004 K09285 - gmx:100814117 654.055