Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2084g00002 ATGACTTTCCATCAACTTTTCAATCTTTGGCTTCTTGCTTTTGGTTTGATCTCTTCTTTTGCTAGTGGAGCTACTCTGTTAGAAGATGAAGTGCAAGTTATGAAAGACATAGCTAAAACACTTGGGAAGAAGGATTGGGACTTCAGTGTAGATCCATGCAGTGGAAAAAGTAATTGGATATCATCAGTTCAAGTGCAAGGATTTGAAAATGCTGTAACCTGCAATTGCACTTTTGGCAATGCCACTATCTGCCATGTTGTTGGCATTGTTCTCCAGTCACAAAATCTTCCGGGCACACTCCCATGGGAACTGGTGAGGTTGCCTTACCTACAAGATATTGACCTCACATGTAACTACCTTCAAGGTACAATCCCTCCGCAATGGGGCTCTATGAATCTTGTCAACATTTCCCTTCTTGAAAACCGACTAACGGGTTCAATCCCAAAAGAACTAGGAAACATCACCACCCTGAAAAGTTTGATCCTGGAGTTCAATCAATTATCTGGACAGCTTCCTCCAGAGCTTGGGAATCTTCCCCGGCTTGAAAGACTGCTTCTAACCTCCAACTATTTTACTGGAAATTTACCTGCAACATTTGCTAGGCTTACTACATTGAATCACCTTCGACTTGGCGATAATCAATTCTCTGGAACTATACCTGATTTCATTCAGAGTTGGACAAGTCTTGAGAGGCTGGTGATGCAAGCGAGTGGTTTGAGTGGCCCAATTCCTTCTGGAATTTCATTTCTGAAAAACCTCACTGACTTGAGAATTAGTGACTTGAAAGGACCAGATTTTCATTTTCCACAACTTAATAACTTGACAAATGTGGAAACACTGGTTATGCGAAGTTGCAATCTTATAGGAATGGTTCCTGAATATCTTGGAAGATTGACTAATTTAAAATCATTAGACCTCAGTTTTAACAAATTAAGTGGACAGATTCCGACCATGGGTAGCCTAGAGGGCCCAGAGAGCATCAGTATGCTATACTTAACGGGAAACCTTTTTGATGGACCACTGCCCAATTGGATAGTTAGACCAGACTACACAGATCTCTCATATAACAACTTGAGCATCACACACCCAGAGCAATTGACATGTCAACAGGGAAGCGTGAACTTGTTTGGATCATCTTTGAAGGGAAATAATATGGGAATGGTTCCATGTTTGGGGAACATTCAGTGTCCTAAAACTTTGTACTCTCTCCGTATAAACTGTGGTGGGAAGCTCATAACTTCTAATGGAAGCATGACATATGATGATGATTCACAAGAAGCTGGACCGTCAAAATTCCACCTGAGTGGATCAAACTGGGCATTTAGCAATACTGGCCACTTCTTTGACAGTGGCCTTGGAGACTACTACACCTGGTCCAATAATACAACTAAGCTTGTTATGGACAATGCTGAACTGTATATGGATGCACGTGTTTCTCCCCTTTCTCTCACATATTATGGATTTTGCATGGGAAATGGAAACTACACAGTAAATCTCCATTTTGCAGAGATAATGTTCACTGATGATCAAACATATAAGAGCCTTGGAAGGCGTGTATTTGACATATATATTCAGAGAAAGTTGGTGCTGAACGATTTCAATATTGCAAAAGAAGCTGGAGGTGTTGGTAAGGCAATCATAAAAAAGTTCACTGCTATGGTGACTAGTAATACCTTGGAGATTCGCTTTTATTGGGCTGGGAAAGGGACAACTGCTATCCCATTTGCATCAGTATATGGTCCTCTTATATCAGCTATATCAGTTGATCCTGACTTTACACCCCCAGTGGGAAATGGAAGTAGCATACATGTGCGGTCCATTATTGCAGTTGTAGTTGCTGGAGCACTTTTTATCATCATGATATTGGGTGTAGCTTGGTGGAGAGGATGTCTAGGACACAAAGGTTCAGTAGAAAGAGAGCTAAAGGATTTAGATCTGCAAACTGGTTTATTCACCTTAAGGCAAATCAAAGCAGCAACAAATAACTTTGACATTTCCAATAAGATTGGAGAAGGAGGCTTTGGTCCTGTTTACAAGGGCATTTTGTTGGATGGCACAATAATAGCAGTCAAGCAACTTTCAGCAAAATCAAAGCAAGGAAACCGTGAGTTTGTAAATGAGATAGGCATGATCTCAGCTTTGCAACACCCTTGTCTTGTTAAACTTTATGGTTGTTGTGTTGAGGGTGATCAGTTGTTGCTGGTATATGAGTACATGGAAAACAATAGCCTTGCACGTGCTTTATTTGGCCGTGAAGAATCCCGTTTAAAATTGAATTGGCAACCAAGGCACAAGATTTGTGTTGGTATTGCTAGAGGTTTGGCTTTCCTGCATGAAGAGTCAAGATTGAAAATTGTTCACAGGGACATTAAGGCCACTAATGTGTTGCTAGACAAAGACTTGAACCCAAAGATATCTGATTTTGGTTTGGCCAAGCTTGATGAGGAGGACAATACTCACATAAGCACCCGAATAGCTGGGACCTATGGATATATGGCTCCTGAGTATGCAATGCATGGTTATTTGACCGAGAAAGCTGATGTCTATAGTTTTGGAATTGTTGCATTGGAAATTGTTAGTGGAAAGAGCAACACCGTGCACCGGTCAAAGGAAGGAGCATTGTATATTCTTGATTGGGCACATCTGTTGAAAGAGAAAGGTAACCTAATGGAACTAGTTGATAAAAGGTTAGGTTCAGATATCAATGAAGAGGAGGCAATGGTGATGATCAAAGTGGCTCTCCTATGCACCAATGCCACTTCAAACCTTAGGCCAACCATGTCTTCAGTGCTAAGCATGCTTGAAGGCAGAACAGTGGTTCCAGAATTTGTTTCAGATTCAAGTGAGGTAATGGATGAAATGAAGTTGGAGGCAATGAGACAGTATTACTATGAGATAGAAGAAAATACGATAAGTGAGACACAAAAGGTTGATAATGGGCCATGGACTGCTTCATCTTCATCAGCTGTAGACCTCTACCCAGACCACATTGATTCTTCTTATTGGGAGGAAAGAAATTGA 3021 0.4098 MTFHQLFNLWLLAFGLISSFASGATLLEDEVQVMKDIAKTLGKKDWDFSVDPCSGKSNWISSVQVQGFENAVTCNCTFGNATICHVVGIVLQSQNLPGTLPWELVRLPYLQDIDLTCNYLQGTIPPQWGSMNLVNISLLENRLTGSIPKELGNITTLKSLILEFNQLSGQLPPELGNLPRLERLLLTSNYFTGNLPATFARLTTLNHLRLGDNQFSGTIPDFIQSWTSLERLVMQASGLSGPIPSGISFLKNLTDLRISDLKGPDFHFPQLNNLTNVETLVMRSCNLIGMVPEYLGRLTNLKSLDLSFNKLSGQIPTMGSLEGPESISMLYLTGNLFDGPLPNWIVRPDYTDLSYNNLSITHPEQLTCQQGSVNLFGSSLKGNNMGMVPCLGNIQCPKTLYSLRINCGGKLITSNGSMTYDDDSQEAGPSKFHLSGSNWAFSNTGHFFDSGLGDYYTWSNNTTKLVMDNAELYMDARVSPLSLTYYGFCMGNGNYTVNLHFAEIMFTDDQTYKSLGRRVFDIYIQRKLVLNDFNIAKEAGGVGKAIIKKFTAMVTSNTLEIRFYWAGKGTTAIPFASVYGPLISAISVDPDFTPPVGNGSSIHVRSIIAVVVAGALFIIMILGVAWWRGCLGHKGSVERELKDLDLQTGLFTLRQIKAATNNFDISNKIGEGGFGPVYKGILLDGTIIAVKQLSAKSKQGNREFVNEIGMISALQHPCLVKLYGCCVEGDQLLLVYEYMENNSLARALFGREESRLKLNWQPRHKICVGIARGLAFLHEESRLKIVHRDIKATNVLLDKDLNPKISDFGLAKLDEEDNTHISTRIAGTYGYMAPEYAMHGYLTEKADVYSFGIVALEIVSGKSNTVHRSKEGALYILDWAHLLKEKGNLMELVDKRLGSDINEEEAMVMIKVALLCTNATSNLRPTMSSVLSMLEGRTVVPEFVSDSSEVMDEMKLEAMRQYYYEIEENTISETQKVDNGPWTASSSSAVDLYPDHIDSSYWEERN 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2084g00002 1006 SUPERFAMILY Protein kinase-like (PK-like) 646 948 IPR011009 -
Gabi2084g00002 1006 ProSiteProfiles Leucine-rich repeat profile. 300 322 IPR001611 GO:0005515
Gabi2084g00002 1006 Gene3D Ribonuclease Inhibitor 264 378 IPR032675 -
Gabi2084g00002 1006 Gene3D Ribonuclease Inhibitor 196 263 IPR032675 -
Gabi2084g00002 1006 Gene3D Ribonuclease Inhibitor 32 195 IPR032675 -
Gabi2084g00002 1006 SMART serkin_6 663 934 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2084g00002 1006 Gene3D Transferase(Phosphotransferase) domain 1 739 947 - -
Gabi2084g00002 1006 Gene3D Phosphorylase Kinase; domain 1 633 738 - -
Gabi2084g00002 1006 CDD STKc_IRAK 669 936 - -
Gabi2084g00002 1006 ProSiteProfiles Protein kinase domain profile. 663 944 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2084g00002 1006 SUPERFAMILY L domain-like 80 358 - -
Gabi2084g00002 1006 FunFam Putative LRR receptor-like serine/threonine-protein kinase 739 946 - -
Gabi2084g00002 1006 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase isoform A 30 189 - -
Gabi2084g00002 1006 Pfam Protein tyrosine and serine/threonine kinase 665 933 IPR001245 GO:0004672|GO:0006468
Gabi2084g00002 1006 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 400 591 - -
Gabi2084g00002 1006 ProSitePatterns Serine/Threonine protein kinases active-site signature. 785 797 IPR008271 GO:0004672|GO:0006468
Gabi2084g00002 1006 Gene3D - 399 590 - -
Gabi2084g00002 1006 Pfam Malectin domain 402 586 IPR021720 -
Gabi2084g00002 1006 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 195 262 - -
Gabi2084g00002 1006 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 17 965 - -
Gabi2084g00002 1006 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 632 738 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2084g00002 Gabi-Chr2084 111079 143924 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2084g00002 17 972 Receptor kinase-like Gene Family AT1G53420 55.567 0.0 1023
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi2084g00002 PK_Tyr_Ser-Thr 9.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2084g00002 - - gmx:100786496 1500.34