Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2084g00001 ATGAAAGACATAGCTAATACACTTGGGAAGAAGGATTGGGACTTCAGTGTAGATCCATGCAGTGGAAAAAGTAATTGGACTTCATCTGTTCAAGTGCAAGGATTTAAAAATGCTGTAACCTGCAATTGCTCTTTTGCCAATGCCACTATATGCCATGTTGTTAGCATTGTTCTCAAGTCACAAAATCTTCCGGGCACACTCCCATGGGAACTGGTGAGGTTGCCTTACCTACAAGAAATTGATCTCACACGTAACTATCTTCAAGGTACAATCCCTCCACAATGGGGCTCCATGAATCTTGTCAACATTTCCGTTCTTGGAAACAGACTAACGGGTTCAATCCCAAAAGAACTGGGAAACATCACCACCCTTAAAAGTTTGGTTCTGGAGTTCAATCAATTATCTGGACAGCTTCCTTCAGAGCTTGGAAATCTTCCCCAGCTTGAAAGACTGCTTCTAACCTCCAACTATTTTACTGGAAATTTACCTGCAACATTTACCAGGCTTACTACATTGAATCACCTTCGACTTGGCGATAATCAATTCTCTGGAACTATACCGGATTTCATTCAGAGTTGGACAAGTCTTGAGAGGCTGGTGATGCAAGCGAGTGGTTTGAGTGGCCCAATTCCTTCTGGAATTTCATTTCTAAAAAATCTCACTGATTTGAGAATTAGTGACTTGAAAGGACCAGATTTTCCTTTTCCACAACTTAATGACTTGACAAATATTGAAACACTGGTATTGAGAAGTTGCAATCTTATAGGAACGGTTCCTGAATATCTTGGGAAATTGACTAATTTAAAATCATTAGACCTCAGTTTTAACAAATTAAGTGGACAGATTCCGACCATGGGTGTCCTAGAGGGCCCAGAGAGCATCAATATACTATACTTAACAGGAAACCTTTTTGATGGACCACTGCCCGGTTGGATAGATAGACCAGACTACACAGATCTCTCATATAACAACTTGAGCATCACACACCCAGAGCAATTGACATGTCAACAGGGAAGCGTGAACTTGTTTGCATCATCTTTGAAGGGAAATAATATGGGAATGGTTCCATGTTTGGGGAACATTCAGTGTCCTAAAAGTAAGTTGATTTCTTGGTACTCTCTCCGGATAAACTGTGGTGGGAAGCTCATAACTTCTAATGGAAGCATGACATATGATGATGATTCACAAGAAGCTGGACCATCAAAATTTCGCCTGAGTGGACCAAACTGGGCATTTAGCAATACTGGTCACTTCTTTGATAGTGGCCTTGTAGACTACTATACCTGGTCTAATAATACAACTAAGCTTGTTATGGACAATGCTGAACTGTATATGGATGCACGTGTTTCTCCCCTTTCTCTCACATATTATGGATTTTGCATGGGAAATGGAAACTACACAATAAATCTCCATTTTGCAGAGATAATGTTCACTGATGATCAAACATATAAGAGCCTTGGAAGGCGTGTATTTGACATATATATTCAGAGAAAGTTAGTGCTGAAGGATTTCAATATTGCAAAAGAAGCAGGAGGAGTTGGTAAGGCAATCATAAAAAAGTTCACTGCTATTGTGACTAGTAATACCTTGGAGATTCGCTTTTATTGGGCTGGGAAAGGGACAACTGCTATCCCATTTGGATCAGTATATGGTCCTCTTGTATCAGCTATATCAGTTGATCCTGACTTTACACCCCCAGTGGAAAATGGAAGTAGCATACATGTGCGGTCCATTATTGCAATCGTAGTTGCTGGAGCACTTCTTATCATCATGGTATTTGGTATAGCTTGGTGGAGAGGATGTCTAGGACAGAAAGGTTCATTAGAAAGAGAACTAAGGGGTTTAAATCTGCAAACTGGCTTATTTACCTTAAGGCAAATCAAAGCAGCAACTAACAACTTTGATATTGCCTTTAAGATTGGAGAAGGAGGGTTTGGTCCTGTTTACAAGGGTGTTCTTTCAGATGGCACAGTAGTAGCAGTTAAGCAACTTTCTTCTAAATCAAAGCAAGGGAATCGTGAGTTTATCAATGAGATTGGCATGATTTCTGCTTTGCAACACCCTTGTCTAGTTAAGCTCTATGGTTGTTGTATGGAGGGAGATCAGTTGTTACTGATATATGAATACATGGAAAACAATAGCCTTGCCCGTGCTTTGTTTGGAAAAGGTCAATTGAAGTTGGATTGGTCAACAAGGAAGAGGATTTGTGTTGGTATTGCTAGAGGTTTGGCTTACCTCCATGGAGAATCAAGGCTAAAGATAGTTCACAGGGACATCAAGGCCACTAATGTATTACTGGATAAAGATCTCAATGCAAAGATATCTGATTTTGGTTTGGCCAAGCTTGATGAAGGGGGCTATACCCACATAACCACCAGAGTAGCTGGCACTTATGGATATATGGCTCCTGAATATGCAATGCATGGTTATTTGACTGACAAAGCAGATGTTTATAGTTTTGGAATTGTTGCCTTGGAAATTGTTAGTGGGAAGAGCAACACCATGAACTGGCCAAAGGAAGAGTGCTTCTCTCTTGTTGATTGGGTGCATCTCTTGAAAGAAAATGGTAATCTAATGAATCTAGTTGATGAAAGGTTGTGTGAAGACTTAAAAAAAGAGGAAGTAATGGTCATGATCAATGTGGCTCTTTTATGCACACATGCTTCTCCAATGCACAGGCCCACCATGTCTTCAGTGGTAAGCATGCTTGAAGGCAAAACTGTTGTTCAAGAGGTGATGCCAGACACAAGCCAGGTATTTCATAGCAAAGAGATTGAGGTGATCCAACAGTATTACAAGAAAAGAGAAAAAAATAAGACCCCTCATACTCAAGAAGAGAGCATCTCAATAGATGAAACTGCAGAATTTATGTCTGATACAGATCTCCATTCCATCAACCTGGATTGTTCTTACTATGAGAAAAGTGATTAG 2931 0.4012 MKDIANTLGKKDWDFSVDPCSGKSNWTSSVQVQGFKNAVTCNCSFANATICHVVSIVLKSQNLPGTLPWELVRLPYLQEIDLTRNYLQGTIPPQWGSMNLVNISVLGNRLTGSIPKELGNITTLKSLVLEFNQLSGQLPSELGNLPQLERLLLTSNYFTGNLPATFTRLTTLNHLRLGDNQFSGTIPDFIQSWTSLERLVMQASGLSGPIPSGISFLKNLTDLRISDLKGPDFPFPQLNDLTNIETLVLRSCNLIGTVPEYLGKLTNLKSLDLSFNKLSGQIPTMGVLEGPESINILYLTGNLFDGPLPGWIDRPDYTDLSYNNLSITHPEQLTCQQGSVNLFASSLKGNNMGMVPCLGNIQCPKSKLISWYSLRINCGGKLITSNGSMTYDDDSQEAGPSKFRLSGPNWAFSNTGHFFDSGLVDYYTWSNNTTKLVMDNAELYMDARVSPLSLTYYGFCMGNGNYTINLHFAEIMFTDDQTYKSLGRRVFDIYIQRKLVLKDFNIAKEAGGVGKAIIKKFTAIVTSNTLEIRFYWAGKGTTAIPFGSVYGPLVSAISVDPDFTPPVENGSSIHVRSIIAIVVAGALLIIMVFGIAWWRGCLGQKGSLERELRGLNLQTGLFTLRQIKAATNNFDIAFKIGEGGFGPVYKGVLSDGTVVAVKQLSSKSKQGNREFINEIGMISALQHPCLVKLYGCCMEGDQLLLIYEYMENNSLARALFGKGQLKLDWSTRKRICVGIARGLAYLHGESRLKIVHRDIKATNVLLDKDLNAKISDFGLAKLDEGGYTHITTRVAGTYGYMAPEYAMHGYLTDKADVYSFGIVALEIVSGKSNTMNWPKEECFSLVDWVHLLKENGNLMNLVDERLCEDLKKEEVMVMINVALLCTHASPMHRPTMSSVVSMLEGKTVVQEVMPDTSQVFHSKEIEVIQQYYKKREKNKTPHTQEESISIDETAEFMSDTDLHSINLDCSYYEKSD 976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2084g00001 976 Gene3D Transferase(Phosphotransferase) domain 1 710 925 - -
Gabi2084g00001 976 Gene3D Ribonuclease Inhibitor 158 230 IPR032675 -
Gabi2084g00001 976 Gene3D Ribonuclease Inhibitor 231 345 IPR032675 -
Gabi2084g00001 976 FunFam Putative LRR receptor-like serine/threonine-protein kinase 710 915 - -
Gabi2084g00001 976 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase isoform A 1 156 - -
Gabi2084g00001 976 CDD STKc_IRAK 640 905 - -
Gabi2084g00001 976 ProSiteProfiles Leucine-rich repeat profile. 267 289 IPR001611 GO:0005515
Gabi2084g00001 976 SMART serkin_6 634 903 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2084g00001 976 Gene3D Phosphorylase Kinase; domain 1 605 709 - -
Gabi2084g00001 976 Pfam Malectin domain 373 557 IPR021720 -
Gabi2084g00001 976 ProSitePatterns Serine/Threonine protein kinases active-site signature. 754 766 IPR008271 GO:0004672|GO:0006468
Gabi2084g00001 976 Pfam Protein tyrosine and serine/threonine kinase 639 903 IPR001245 GO:0004672|GO:0006468
Gabi2084g00001 976 SUPERFAMILY L domain-like 15 378 - -
Gabi2084g00001 976 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 371 562 - -
Gabi2084g00001 976 ProSiteProfiles Protein kinase domain profile. 634 913 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2084g00001 976 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 162 229 - -
Gabi2084g00001 976 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 603 709 - -
Gabi2084g00001 976 Gene3D - 371 561 - -
Gabi2084g00001 976 SUPERFAMILY Protein kinase-like (PK-like) 618 925 IPR011009 -
Gabi2084g00001 976 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 1 922 - -
Gabi2084g00001 976 Gene3D Ribonuclease Inhibitor 10 157 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2084g00001 Gabi-Chr2084 26839 37610 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2084g00001 1 933 Receptor kinase-like Gene Family AT1G53420 54.545 0.0 992
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi2084g00001 PK_Tyr_Ser-Thr 3.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2084g00001 - - gmx:100786496 1585.85