Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2079g00001 ATGCATACCAGGCTTAAAGATGAACCAAAGGTTGCTCTTGGAGCTCACAACCAGCTCCTCAAGATAAAGAAACGATTCCAAAGTGATGAGCATGTTTACAAATCGTTCTTGAACATTTCCAATATGTACCGCAAAGAGCATAAGGACATAGGTGAAATTTATAGTGAGGTTGCTACCCTGTTTAAGGATCATCGAGATTTGCTTGAGGAGTTCACTAGATTCTTACCAGATAGTTTCGCAGCACCTTCTACACAGCATGCTCCGGATGCTCGAAATTCATTGCAGCGCTTTAGTGAGCGGAGTTCTATGGCACCCATGATGCGGCAAATGCAAGTATATCGACGAAAGAGGCTTCCTTCTCATGATCGTGAGCGTGATCTGAGTGTTGAACACCCTGAGATGGATGATGACAACACAATGATGAACATGCACAAGAAGCGGAGGAAACGTGAGAGTAAGGATATGAGGATTAATCGTGATCAGGATGAGAGAGAACCTGATCATATAAATGCTCAACAATTTCTTGAGAAAAAGAAATCTGTCAAGAAAGCTGAAGGTTTTGGGTTGGCTTCAGACTTTTCTTCTAAGGAAGACAAGGATACCTTAAAGAACATGTATAGTCAAGCATTCAGTTTCTTTGAGAAAGTTAAGGAGAAGTTGAACAGTGCTGATGACTACCAAGCTTTCTTGAAGTGCCTTCATAATTTTTTCGTCAGTGAAATAATAAAAAGGAATGAATTGCAAAATTTGGTAACCGATTTACTTGGAAAGCATCTTGATCTTATGGTGGAATTCAATGATTTCCTGGAGTGTTTGGAAAATATTGATGGGTTCCTTGCTGGTGTCATGAGTAAAAAGTCACTAAGATCATCAAAGTTGGAGGACAAAGACAAAGACAAAGAGCAGAAGCGTGAGATGGATGGAGCTAAAGAGAAGGAAAGATACAGGGAGAAGGAGTACATGGGAAAATCCATTCAAGAACTTGACCTCAGTGACTGTAAACGTTGCACTCCCAGCTACCGGCTTCTACCTGCTGATTATCCAATTCCTACAGCTAGTCAGAGATCTGAGCTTGGTGCTCAAGTATTGAATGATCACTGGGTATCTGTGAGTTCAGGAAGTGAGGATTACTCTTCCGAACATATGTGCAGGAATCAGTACGAAGAGAGCTTGTTCAGATGTGAAGATGACAGATTTGAGCTGGACATGTTATTAGAGTCTGTGAGTTCTGCAGCTAAACGTGCAGAGGAATTATATAATAACATGAATGAAAATAAGATCAATATGGAGACTCTGAACCGTATTGAAGATTACTTTACTGTTCAAAATTTAAGGTGCATTGAACGTCTATATGGTGACCATGGTCTTGACGTTATAGACATATTGCGTAAAAACCCAACTCGTGCGCTCCCTGTAATATTGACTCGACTGAAGCAGAAACAGGAGGAATGGAGTCGGTGTCGTTCAGATTTCAATAAAGTTTGGGCTGAAATTTATTCTAAAAATCACTTAAAGTGA 1518 0.4032 MHTRLKDEPKVALGAHNQLLKIKKRFQSDEHVYKSFLNISNMYRKEHKDIGEIYSEVATLFKDHRDLLEEFTRFLPDSFAAPSTQHAPDARNSLQRFSERSSMAPMMRQMQVYRRKRLPSHDRERDLSVEHPEMDDDNTMMNMHKKRRKRESKDMRINRDQDEREPDHINAQQFLEKKKSVKKAEGFGLASDFSSKEDKDTLKNMYSQAFSFFEKVKEKLNSADDYQAFLKCLHNFFVSEIIKRNELQNLVTDLLGKHLDLMVEFNDFLECLENIDGFLAGVMSKKSLRSSKLEDKDKDKEQKREMDGAKEKERYREKEYMGKSIQELDLSDCKRCTPSYRLLPADYPIPTASQRSELGAQVLNDHWVSVSSGSEDYSSEHMCRNQYEESLFRCEDDRFELDMLLESVSSAAKRAEELYNNMNENKINMETLNRIEDYFTVQNLRCIERLYGDHGLDVIDILRKNPTRALPVILTRLKQKQEEWSRCRSDFNKVWAEIYSKNHLK 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2079g00001 505 ProSiteProfiles PAH domain profile. 7 78 IPR003822 GO:0006355
Gabi2079g00001 505 FunFam Paired amphipathic helix protein SIN3 199 274 - -
Gabi2079g00001 505 Pfam Paired amphipathic helix repeat 31 75 IPR003822 GO:0006355
Gabi2079g00001 505 Pfam Paired amphipathic helix repeat 224 269 IPR003822 GO:0006355
Gabi2079g00001 505 SUPERFAMILY PAH2 domain 19 77 IPR036600 GO:0006355
Gabi2079g00001 505 MobiDBLite consensus disorder prediction 153 171 - -
Gabi2079g00001 505 ProSiteProfiles PAH domain profile. 202 272 IPR003822 GO:0006355
Gabi2079g00001 505 MobiDBLite consensus disorder prediction 115 144 - -
Gabi2079g00001 505 Pfam Sin3 family co-repressor 334 426 IPR013194 -
Gabi2079g00001 505 FunFam Paired amphipathic helix SIN3-like protein 13 78 - -
Gabi2079g00001 505 Coils Coil 405 435 - -
Gabi2079g00001 505 PANTHER SIN3B-RELATED 19 505 IPR039774 GO:0003714
Gabi2079g00001 505 MobiDBLite consensus disorder prediction 290 315 - -
Gabi2079g00001 505 MobiDBLite consensus disorder prediction 85 105 - -
Gabi2079g00001 505 SUPERFAMILY PAH2 domain 203 270 IPR036600 GO:0006355
Gabi2079g00001 505 Gene3D Paired amphipathic helix 200 273 IPR036600 GO:0006355
Gabi2079g00001 505 Gene3D Paired amphipathic helix 14 78 IPR036600 GO:0006355
Gabi2079g00001 505 SMART hdac_interact2seq4b 332 432 IPR013194 -
Gabi2079g00001 505 MobiDBLite consensus disorder prediction 79 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2079g00001 Gabi-Chr2079 3124 10038 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gabi2079g00001 Sin3_corepress 5.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2079g00001 K11644 - gmx:100807181 751.895