Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2077g00032 ATGGAGGAAGCAATGGCAGCAAGGTATTGGTGTCATATGTGCTCTCAAATGGTCAATCCCATCATGGAAGTGGAGATCAAATGCCCATTTTGTCAACATGGATTTGTTGAAGAAATGAGTAATAACACCAGCAGCAGCGAAATTCACAATACTCCGGAAGCTGATTTTGGATCCGAGAGGGCTCTCTCCCTATGGGCGCCCATCTTGCTAGGCATGATGGGTAATCCACGTCATCGTCGAAGACTGAGACGAATAGAGCTTGATGATGATTATGAAAATGGTAATCTTGACGATGTTGATGGTGTAGCACGCCATGGTGGAGAAACCGAGTATGATCGAGAGCTTGAGTCTATCCTTCAGAGGAGAAGGAGAAGCTCAGCTACCATTCTACAATTGCTCCAAGGCATTAGAGCTGGACTGGCATCTGAATCATATGAGAATACCGACAGTGATGACCATGACAGGGAAAGAGAAAGAGAGCGTGTAATCTTGATCAATCCTTTTAATCAGACTATTATTGTTCAAGGTTCTTATGATTCAAACCGGGATCAAAGTGATAATCATAGCCCCATTGGGTCTATGGGTGACTATTTCATAGGGCCTGGTTTGGATTTATTGTTGCAACATTTGGCTGATCCCAATAGGTATGGAACTCCACCAGCACAGAAGGAGGCCATTGAAGCACTGCCTACTGTGACTATCAATGAGAATTTGCAGTGTTCTGTGTGTCTGGATGATTTTGGAGTTGGTTCTGAAGCTAAAGAGATGCCTTGTAAACATAGGTTTCATAGTGGGTGTATCCTGCCCTGGCTGGAGCTTCATAGTTCTTGTCCGGTTTGCAGGTGTCAATTGCCGGTGGATGAATCTAAGCAAGACTCTGATGCGTCAAGGAACAGCAGTAATCAAAGGGAGAGTGAAAATATTGGACATGAAGATGCTGAAGAAGGAGATAGTGAAGGGAGAAATGCAAGTGGGTTTGGAAGATTCTCATTTCTATGGCCTTTCAATGGATTATTTTCTTCATCAAACTCTTCGTCATCTTCTAATCCCAATACCAACGGAAATGGTACTCAATTAGAAGACAACTGA 1089 0.4343 MEEAMAARYWCHMCSQMVNPIMEVEIKCPFCQHGFVEEMSNNTSSSEIHNTPEADFGSERALSLWAPILLGMMGNPRHRRRLRRIELDDDYENGNLDDVDGVARHGGETEYDRELESILQRRRRSSATILQLLQGIRAGLASESYENTDSDDHDRERERERVILINPFNQTIIVQGSYDSNRDQSDNHSPIGSMGDYFIGPGLDLLLQHLADPNRYGTPPAQKEAIEALPTVTINENLQCSVCLDDFGVGSEAKEMPCKHRFHSGCILPWLELHSSCPVCRCQLPVDESKQDSDASRNSSNQRESENIGHEDAEEGDSEGRNASGFGRFSFLWPFNGLFSSSNSSSSSNPNTNGNGTQLEDN 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2077g00032 362 ProSiteProfiles Zinc finger RING-type profile. 240 281 IPR001841 -
Gabi2077g00032 362 Pfam zinc-ribbon 8 39 IPR039525 GO:0061630
Gabi2077g00032 362 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 208 288 IPR013083 -
Gabi2077g00032 362 CDD RING-H2_RNF126-like 239 281 - -
Gabi2077g00032 362 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 143 285 - -
Gabi2077g00032 362 SMART ring_2 240 280 IPR001841 -
Gabi2077g00032 362 MobiDBLite consensus disorder prediction 341 362 - -
Gabi2077g00032 362 MobiDBLite consensus disorder prediction 288 323 - -
Gabi2077g00032 362 SUPERFAMILY RING/U-box 229 289 - -
Gabi2077g00032 362 FunFam E3 ubiquitin-protein ligase RING1-like 207 287 - -
Gabi2077g00032 362 Pfam Ring finger domain 239 281 IPR001841 -
Gabi2077g00032 362 MobiDBLite consensus disorder prediction 288 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2077g00032 Gabi-Chr2077 251513 253715 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2077g00032 108 287 C3H Transcription Factor Family AT1G26800 37.500 1.45e-30 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2077g00032 - K11982 gmx:100784876 528.094