Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2077g00024 ATGAGGAACCCGGGTTCAACAAATAAGAAGAAGAATAGTAATGGTGGTGGTGGCAGCAGCAGTAGTACTATAACTCCATGCTGCATTAAGGTGGGTTTGAAGAGAGGGCCATGGACTCCTGAGGAAGACGAGGTGTTAGCCGATTATATAAGGAAAGAAGGAGAAGGTCGTTGGAGAACACTTCCCAAGAGAGCTGGCCTCCTCCGCTGCGGCAAGAGCTGTCGCCTCCGCTGGATGAACTATCTCCGCCCTTCTGTCAAGCGCGGCCAGATCGCCCCCGACGAGGAAGATCTCATCCTCCGCCTCCACCGCCTCCTCGGCAACCGATGGTCTTTGATAGCTGGTAGAATACCGGGAAGAACAGATAATGAGATAAAGAACTACTGGAACACACATCTCAGCAAGAAGCTCATAAACCAAGGGATTGATCCAAGAACCCACAAGCCTCTCAACCCACCATCTATTCCTTCACCTTCTAATCATTCATCCAAAGTACCCAAACCCCCAACCGCCAAGGTTCACCAAACCCCTTCTGCTCTCCATCATAATCATCTCATTACTTCTCTCCATCATCATCATCATCATGATCATGAACAACAAGCTCCGACAGCTGGGAATATCGTAACTAACAACAATCTTAATCCAGCCGATGATGTCTCTACAATGGGCTTAATTAGAACCAATGATCAACTACTTACCCCAAACAATGAGGATTATGATGATATAAATTATTGTTCTGACGATGTCTTTTCTTCCTTCCTCAATTCATTGATCAATGAGGATGCTTTTGCTGCCCAGCAACACCTGCAATCAGCACTGCCTTCTGATGATCATGATCATGATCCTTTGATTTCAATTACAACTGCATCTGCGACGCCACCCTATGCCGGCCTTGGTGTTGTCTGGGAATCGCCACTCATGTCTGCTACTTTCAGCCAAAGTGACCCTAACCCCAAGAGGGTTCTTGATCACGATCAAAAGCATTTCTCAAATATGTAG 999 0.4675 MRNPGSTNKKKNSNGGGGSSSSTITPCCIKVGLKRGPWTPEEDEVLADYIRKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGQIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLINQGIDPRTHKPLNPPSIPSPSNHSSKVPKPPTAKVHQTPSALHHNHLITSLHHHHHHDHEQQAPTAGNIVTNNNLNPADDVSTMGLIRTNDQLLTPNNEDYDDINYCSDDVFSSFLNSLINEDAFAAQQHLQSALPSDDHDHDPLISITTASATPPYAGLGVVWESPLMSATFSQSDPNPKRVLDHDQKHFSNM 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2077g00024 332 FunFam Myb transcription factor 32 88 - -
Gabi2077g00024 332 CDD SANT 93 133 IPR001005 -
Gabi2077g00024 332 ProSiteProfiles Myb-like domain profile. 30 82 IPR001005 -
Gabi2077g00024 332 FunFam transcription repressor MYB5-like 92 161 - -
Gabi2077g00024 332 MobiDBLite consensus disorder prediction 1 22 - -
Gabi2077g00024 332 MobiDBLite consensus disorder prediction 311 332 - -
Gabi2077g00024 332 SMART sant 34 84 IPR001005 -
Gabi2077g00024 332 SMART sant 87 135 IPR001005 -
Gabi2077g00024 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 83 137 IPR017930 -
Gabi2077g00024 332 Gene3D - 92 154 - -
Gabi2077g00024 332 Gene3D - 32 88 - -
Gabi2077g00024 332 MobiDBLite consensus disorder prediction 142 177 - -
Gabi2077g00024 332 MobiDBLite consensus disorder prediction 189 213 - -
Gabi2077g00024 332 ProSiteProfiles Myb-like domain profile. 83 133 IPR001005 -
Gabi2077g00024 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 82 IPR017930 -
Gabi2077g00024 332 SUPERFAMILY Homeodomain-like 32 129 IPR009057 -
Gabi2077g00024 332 MobiDBLite consensus disorder prediction 318 332 - -
Gabi2077g00024 332 Pfam Myb-like DNA-binding domain 35 82 IPR001005 -
Gabi2077g00024 332 Pfam Myb-like DNA-binding domain 92 133 IPR001005 -
Gabi2077g00024 332 CDD SANT 37 82 IPR001005 -
Gabi2077g00024 332 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 25 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2077g00024 Gabi-Chr2077 160451 162057 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2077g00024 13 290 MYB Transcription Factor Family AT3G13540 51.237 6.03e-90 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi2077g00024 Myb_DNA-binding 2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2077g00024 K09422 - jre:108982488 354.369