Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2077g00010 ATGCGACCTTCATGGGCTGATTTGGCTGCAAATTCAGCAGCTGAAAATGCACCTACTGCTTCATCTGCAAACAATGCTAACACTCTAGCTCCCTCGCGACCTGTTTATGTGCCTCCGCATCTGAGGAATCGTCCACCATCAGCAGAATCCCCTGCTCCAGTACAGACTGGCACTGCATCTGCTTCTAGTAATGCTGGATCACGATGGGCTGGGCCCAGAAATGATTACCGTTCTGGGGGGGTTGGTGGTGGTGGCAGTAGCAGTGGCAGTGGCCGCACAAGTGGATGGGGGAACAGAACTGGTGGTGGTGGTGGTTGGGATCGTGGAAGGGACCGTGAAGTTAATCCCTTTGGTGATCAGGATGATGCAGAAGAGGCATTAAGTGAGCAGGAGAATACTGGAATTAATTTTGATGCATATGAAGACATTCCAGTGGAGATCAGTGGTGAGAATGTGCCTCCGCCCGTGAATACATTTGCAGAGATTGACTTGGGGGAAGCACTTAATTTGAATATAAGACGGTGCAAATATGTGAAGCCAACACCTGTTCAGCGGCATGCCATACCTATCTCCCTTGCTGGAAGGGACTTGATGGCTTGTGCGCAGACTGGTTCTGGAAAGACAGCTGCTTTCTGTTTCCCAATTATCTGTGGAATTATGAGGGGCCAACCCGTGCAAAGGCCACCTCGCGGGGTGCGTACAGTGTATCCACTTGCACTTGTTCTCTCACCAACTAGGGAGCTATCTATGCAAATACATGAAGAGGCTAGGAAGTTTTCATACCAGACAGGGGTTAGGGTGGTTGTTGCTTATGGCGGAGCTCCAATAAACCAGCAGCTACGGGATCTTGAGAGAGGGGTGGACATTCTTGTTGCAACTCCAGGAAGACTGGTTGATTTGCTGGAGAGAGCTAGAGTTTCACTGCAGATGATAAGATATTTGGCCTTAGATGAGGCAGATAGGATGCTGGATATGGGTTTTGAACCGCAAATAAGGAAGATTGTAGAACAAATGGACATGCCTCCGCAAGGTGTTAGACAGACCGTGCTGTTCAGTGCCACATTTCCAAAAGAGATACAGAGACTAGCAGCTGATTTCCTTTCAAAGTATATTTTTCTGGCTGTGGGAAGAGTGGGCTCAAGTACTGATTTGATTGTCCAAAGAGTTGAGTATGTTCAAGAGTCTGACAAAAGAAGTCACCTCATGGACCTTCTTCATGCGCAGAGGGCAAATGGTGTACAAGGAAAGCAAGCTTTGACTTTGGTGTTTGTTGAGACAAAGAAGGGAGCTGATGCTCTGGAACACTGGTTGACTCTTAATAAATTTCCAGCAACTACTATTCATGGTGACAGGTCACAACAGGAAAGAGAATTGGCATTAAGGTCATTTAAAAGTGGCAATACCCCAATATTGGTTGCTACGGATGTGGCTGCGCGTGGTCTTGATATTCCTCATGTTGCTCATGTAGTTAACTTTGACCTTCCTAATGATATTGATGATTATGTACACCGAATTGGAAGGACAGGGCGAGCAGGAAAGAAAGGCCTTGCAACTGCATTCTTCAATGACAACAATGCATCTCTAGCAAGGGCTTTAGCAGAACTGATGCAAGAAGCACATCAAGAAGTACCTGCATGGCTCTCGCGTTATGCTGCTCGATCTTCCTTTGGTGGAGGAAGGAACCGTAGATCAGGAGGAGGCCGTTTTGGTGGCCGTGACTTTCGAAGAGAAGGTTCATTTAGCAGGGGTGGTTCTGATTACTATGGTGCAGGAAACAGCAGTGGTGGTGGTGGTGGATATGGGGCTTCTGGTGGGTATGCTGGAGGATACGGTTCTGGGGTAACCAGTGCATGGGATTGA 1860 0.478 MRPSWADLAANSAAENAPTASSANNANTLAPSRPVYVPPHLRNRPPSAESPAPVQTGTASASSNAGSRWAGPRNDYRSGGVGGGGSSSGSGRTSGWGNRTGGGGGWDRGRDREVNPFGDQDDAEEALSEQENTGINFDAYEDIPVEISGENVPPPVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISLAGRDLMACAQTGSGKTAAFCFPIICGIMRGQPVQRPPRGVRTVYPLALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRDLERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPQGVRQTVLFSATFPKEIQRLAADFLSKYIFLAVGRVGSSTDLIVQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADALEHWLTLNKFPATTIHGDRSQQERELALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNDNNASLARALAELMQEAHQEVPAWLSRYAARSSFGGGRNRRSGGGRFGGRDFRREGSFSRGGSDYYGAGNSSGGGGGYGASGGYAGGYGSGVTSAWD 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2077g00010 619 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 384 551 IPR001650 -
Gabi2077g00010 619 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 127 551 - -
Gabi2077g00010 619 MobiDBLite consensus disorder prediction 14 31 - -
Gabi2077g00010 619 MobiDBLite consensus disorder prediction 81 97 - -
Gabi2077g00010 619 SMART ultradead3 176 388 IPR014001 -
Gabi2077g00010 619 MobiDBLite consensus disorder prediction 556 575 - -
Gabi2077g00010 619 MobiDBLite consensus disorder prediction 105 119 - -
Gabi2077g00010 619 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 238 530 IPR027417 -
Gabi2077g00010 619 CDD DEADc_DDX3_DDX4 158 379 IPR044763 GO:0003724|GO:0005524
Gabi2077g00010 619 FunFam Probable ATP-dependent RNA helicase DDX4 120 375 - -
Gabi2077g00010 619 Gene3D - 376 555 IPR027417 -
Gabi2077g00010 619 Pfam DEAD/DEAH box helicase 181 362 IPR011545 GO:0003676|GO:0005524
Gabi2077g00010 619 Pfam Helicase conserved C-terminal domain 397 512 IPR001650 -
Gabi2077g00010 619 MobiDBLite consensus disorder prediction 1 132 - -
Gabi2077g00010 619 MobiDBLite consensus disorder prediction 49 69 - -
Gabi2077g00010 619 SMART helicmild6 431 512 IPR001650 -
Gabi2077g00010 619 FunFam ATP-dependent RNA helicase RhlB 376 555 - -
Gabi2077g00010 619 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 157 185 IPR014014 GO:0003724
Gabi2077g00010 619 CDD SF2_C_DEAD 385 521 - -
Gabi2077g00010 619 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 188 373 IPR014001 -
Gabi2077g00010 619 Gene3D - 113 375 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2077g00010 Gabi-Chr2077 38249 44054 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2077g00010 155 544 Eukaryotic Initiation Factors Gene Family AT3G19760 32.225 2.59e-62 210