Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2073g00003 ATGGCTAATGCAGATTTGATGTCCCGCTCTTGTGGGACTGGCAACCCCATTGATGATTGTTGGAGATGTGACCCCAATTGGGCTTACAACAGGAGAAGGCTAGCAGATTGTGCAATCGGTTTCGGCAAGAAAGCCATTGGTGGAAAAAATGGTAAGTTATATATTGTCACCGACTCCGGCGACTATGACGCGGTGAAACCGAAACCGGGGACACTCCGGCATGCAGTGATTCAAGACGAGCCATTGTGGATCATATTCGCAAGAGATATGACTATTAAACTGAAGGTAGAGTTAATCATGAACTCGCATAAGACAATTGATGGAAGAGGCGCGAACGTGCATATAGCTGGTGGTCCATGCATTACTATACAATATGTGACCAATGTTATAATACATGGGATACATATACATGATTGTAAGCCAGGTGGGAATGCTATGGTGCGGGACTCACCAGACCACTACGGGTGGAGAACCGTGTCGGATGGTGATGGTATCTCCATCTTAGGAGGAAGCCACATATGGATTGACCATTGCTCATTCTCTCAATGCACTGATGGTTTGATCGATGCCGTTCTTGCGTCCACTGCAATTACCATTTCCAACAATTACTTTACCAAGCACGACAAGGTTATGCTGTTGGGTCACAGCGACTCATACACTCAAGACAAAAACATGCATGTCACTATAGCTTTCAACCACTTTGCAGAAGGGCTTGTTCAAAGGATGCCAATGTGTAGGTTTGGATATTTTCATGTGGTGAACAATGACTTTAAATACATTGTTAAAATGGATTTTAAAGAATTTTAA 807 0.4362 MANADLMSRSCGTGNPIDDCWRCDPNWAYNRRRLADCAIGFGKKAIGGKNGKLYIVTDSGDYDAVKPKPGTLRHAVIQDEPLWIIFARDMTIKLKVELIMNSHKTIDGRGANVHIAGGPCITIQYVTNVIIHGIHIHDCKPGGNAMVRDSPDHYGWRTVSDGDGISILGGSHIWIDHCSFSQCTDGLIDAVLASTAITISNNYFTKHDKVMLLGHSDSYTQDKNMHVTIAFNHFAEGLVQRMPMCRFGYFHVVNNDFKYIVKMDFKEF 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2073g00003 268 PRINTS Pollen allergen Amb family signature 61 86 IPR018082 -
Gabi2073g00003 268 PRINTS Pollen allergen Amb family signature 241 260 IPR018082 -
Gabi2073g00003 268 PRINTS Pollen allergen Amb family signature 97 113 IPR018082 -
Gabi2073g00003 268 PRINTS Pollen allergen Amb family signature 161 182 IPR018082 -
Gabi2073g00003 268 PRINTS Pollen allergen Amb family signature 37 54 IPR018082 -
Gabi2073g00003 268 SUPERFAMILY Pectin lyase-like 9 258 IPR011050 -
Gabi2073g00003 268 SMART amb_all 89 262 IPR002022 -
Gabi2073g00003 268 Gene3D - 14 265 IPR012334 -
Gabi2073g00003 268 PANTHER PECTATE LYASE 18-RELATED 7 259 IPR045032 GO:0030570
Gabi2073g00003 268 Pfam Pectate lyase 97 265 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2073g00003 Gabi-Chr2073 18734 19639 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2073g00003 10 259 Polysaccharide Lyase AT5G63180 77.600 1.03e-151 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2073g00003 K01728 - gmx:100779940 444.891