Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2072g00006 ATGTTCTATTACAAGACAAAGTTTGCTATTCTCTTCACAATCTTCATGTTCTGCTCAACAACTGCAAAAAACAACCATAATTGCAAGCGCAGTTGCGGAGAACATTCTCTGCAATACCCTTTTGGTTTCTCTCATGGCTGTGAAGTCCAACTAAGCTGCAGCAACAGCAAACAAGTCAAAATCGGGGAGTTACAGGTCCAAAACGTAACCTCTGATAGCATATTCATAAGTCTACCAGCGAAATGTAACCGTAGCAAGAATTTCATAGACACCCTTTTCGGCAATAACTTTGCTCCAACATGGAATAACAGCTTTCTCGTTCAGAGTTGTAAGACCAAGCTTGGTGGTTGCTTTATTCCCACATCGAGTTTCATTGGCAACGGGATTCAGGTGGAAGGTTGTGATAGCAGAAGTGATAATATCAGTTGCTTCACGCGATTGCAGCATCAAAATCCGCAAGATGTTATGGGACTAGATGATTGGAGAGGAATTGGGTGCAAGTTCTTGTTCTCTGCTATTGCTGTTGATAAGAGCAAAGACCTTCCAATCCAATTTCAGGTGGTTGAGTTGGGGTGGTGGCTTGAATGGCCTTGTCATTGTTCTGACAATGCAACCTGTGCTGTGGTCCATCTTGCTGGAGGAAAACAAGGTTTCCGGTGCAGCTGCCGTGAAGGTTTCGTCGGAGATGGTTTCATGAACGGCACCGGTTGCCGGAGCAACTTCTCATCAGTTTCTAAATGCAATGCTTCAACACTGAGGTCTGGAGGATGTGGCAAAGCAATCAAAATTGGAGTCCTAGTTGGAGGGATCACAGTTGGAGCTTCCCTGGTGGCTGCTCTGTCTCTTCTATGTTACTTTGCCAAGCATCGTTCCATTTTTCTGAGAAAACAAATGACAGTTAAGCGCCTGTTACGAGAAGCTGCAGGAAACTCTAGTATTCCTTTCTACCCCTACAAAGAAATAGAGAGAGCCACAAATTTTTTCTCAGAGAAACAAAGGCTGGGAACCGGGGCTTTTGGAACAGTTTATGCTGGAAACCTTCACAATGATGAGTGCGTTGCTATAAAAAAGATCAAGTATAGAGACACCAACAGTGTTGACCAAGTCATGAATGAGATCAAGCTCCTCTCTTCAGTGAGTCACCCAAATTTAGTGCGCCTCCTTGGTTGCTGCATAGAAGGGGGAGAGCAGATACTTGTTTATGAGTATATGCCCAATGGAACACTATCTCAACATTTGCAGAGAGAGAGGGGTGGAGTACTCCCATGGACAGTAAGACTCACCATTGCTACTGAAACTGCTAATGCTATAGCATATCTCCATTCTGCAATTGATCCTCCAATTTATCACAGAGACATAAAATCTAGTAATATACTCTTGGACTATAGCTTTCAATCAAAAGTTGCAGATTTTGGGCTTTCTAGGCTTGGCATGACAGAAACATCACATATCTCAACCGCCCCACAAGGGACTCCGGGTTATGTTGATCCCCAATACCACCAGAACTTCCATCTTTCTGATAAAAGCGATGTCTACAGTTTTGGAGTGGTTTTGGTAGAGATAATAACAGCCATGAAAGTGGTTGATTTTGCTCGAGCTCAGAGTGAGATAAATTTGGCTGCACTTGCTGTTGATAGGATTAGGAGGGGTTGTGTAGATGAGATCATAGATCCCTTCCTTGAACCACATAGGGATGCTTGGACACTCTATTCTGTTCACAAGGTGGCTGAGCTTGCATTTAGATGCCTTGCTTTTCATAGTGACATGAGGCCTACTATGATTGAAGTGGCAGAGGAGCTAGAACACATCAGACGCAGTGGTTGGGCAACTATGGAGGAAACTGTATGCACGGCTTCATCGGTTGGGTCCGCGTGTTCATCACTTCGTAATGGAAGTGAGAATTCACTGGGTGGTATAAATTTTGAGAGAGCAGGACAAGGGAGTGAGACATTGATTGTTCAACAGAATACTGATAATTTTTTGCAATCAATGGAGGAGGTGAAGGAAGGCTCTCCTGCATCTGTGCATGATACTTGGTTAAGTGGACCTAGCTCACCTTCAACAAACAGTTTGTTGGGAAATGTAGTTCGGTGA 2094 0.4384 MFYYKTKFAILFTIFMFCSTTAKNNHNCKRSCGEHSLQYPFGFSHGCEVQLSCSNSKQVKIGELQVQNVTSDSIFISLPAKCNRSKNFIDTLFGNNFAPTWNNSFLVQSCKTKLGGCFIPTSSFIGNGIQVEGCDSRSDNISCFTRLQHQNPQDVMGLDDWRGIGCKFLFSAIAVDKSKDLPIQFQVVELGWWLEWPCHCSDNATCAVVHLAGGKQGFRCSCREGFVGDGFMNGTGCRSNFSSVSKCNASTLRSGGCGKAIKIGVLVGGITVGASLVAALSLLCYFAKHRSIFLRKQMTVKRLLREAAGNSSIPFYPYKEIERATNFFSEKQRLGTGAFGTVYAGNLHNDECVAIKKIKYRDTNSVDQVMNEIKLLSSVSHPNLVRLLGCCIEGGEQILVYEYMPNGTLSQHLQRERGGVLPWTVRLTIATETANAIAYLHSAIDPPIYHRDIKSSNILLDYSFQSKVADFGLSRLGMTETSHISTAPQGTPGYVDPQYHQNFHLSDKSDVYSFGVVLVEIITAMKVVDFARAQSEINLAALAVDRIRRGCVDEIIDPFLEPHRDAWTLYSVHKVAELAFRCLAFHSDMRPTMIEVAEELEHIRRSGWATMEETVCTASSVGSACSSLRNGSENSLGGINFERAGQGSETLIVQQNTDNFLQSMEEVKEGSPASVHDTWLSGPSSPSTNSLLGNVVR 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2072g00006 697 Gene3D Phosphorylase Kinase; domain 1 290 403 - -
Gabi2072g00006 697 SUPERFAMILY Protein kinase-like (PK-like) 309 601 IPR011009 -
Gabi2072g00006 697 ProSiteProfiles Protein kinase domain profile. 328 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2072g00006 697 MobiDBLite consensus disorder prediction 671 697 - -
Gabi2072g00006 697 FunFam Wall-associated receptor kinase-like 20 404 613 - -
Gabi2072g00006 697 Pfam Protein kinase domain 328 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2072g00006 697 ProSitePatterns Serine/Threonine protein kinases active-site signature. 448 460 IPR008271 GO:0004672|GO:0006468
Gabi2072g00006 697 Gene3D Transferase(Phosphotransferase) domain 1 404 621 - -
Gabi2072g00006 697 SMART serkin_6 328 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2072g00006 697 FunFam Wall-associated receptor kinase-like 14 295 403 - -
Gabi2072g00006 697 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 9 680 IPR044652 GO:0004672
Gabi2072g00006 697 MobiDBLite consensus disorder prediction 677 697 - -
Gabi2072g00006 697 ProSitePatterns Protein kinases ATP-binding region signature. 334 357 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2072g00006 Gabi-Chr2072 176783 181128 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2072g00006 1 697 Receptor kinase-like Gene Family AT2G23450 54.507 0.0 724
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Gabi2072g00006 Pkinase 7.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2072g00006 - - gmx:100810861 1102.43