Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi206g00009 ATGGATCACTCTCAAGTTGTAACTATTGAAGACATTGACATCAGTGGAAGTTTTGTATGTGTAGATGATATTGTTGATTTGGAAAAAGTCACAGATGGATTTAGAGAAGACGATCATAGTGAAATCATGGCAAACAAAGATGGTGAATGCGAGGAAGATCATGCACATGAAATTGTGGGACATGTTGATATTGAATTAAGCGAGACCCTTATTTTAACTAGAGTTTTTGGGACGTCAGAAGAAGCTTATGCTTTTTATGATGCTTATGCAAAAGTTAAGGGGTTCAGAATACGTAAGCAATACCATAACAAGAGTACAATTACAAAACAACCATATAGGTGGAATTATGTGTGCTCGAATCAAGGTGTCAAGAGACTATGTGATAAAAGAATTAATGTTGACAAAGTCAAAAGGCGAACGGATACAAGGACTAATTGTTTAGCAATGTTACAAATAAAGTTGGTGGATGGCCTATGGAAAGTGGAGAAATTCAATGATACACACAATCATCCATTGATTAACACTCCAACAAAGGTGAAGAAGTTTCTTTCTGAGAATGAATTGAGATGCTCGGATTCAACTAAATCTGTTGTTTCTAAGCTTTTTCAAGAGGGTTTAACATCTTCAACAATCTCAAAGGTTGTGAGCGCTATGAACAAAGAGGTTAATCTTACTCCCGTTCAAATCAACAGTATTATATCTAGCCAGCGAAAGAATAATGTGGGGCGAGAATGTCAGTGTATCATCAAACACTTTCAAAGGATGTCCATGGTTGATGGAGCTTTTTATTTTGATATGCATTTGGCAGAAGATGGAACATTAAGAAGCATATTTTGGGCAGATGGTAGGTCAAGAGCTGCATATGCTCATTTTGGTGAAGTCCTTGTCTTTGATGTGACTTACAAAACAAACAAGTTCAAGTTTCCTTTTGCTCCTTTTGTGGGGGTTAATCACCATGGGCAGACCATCTTATTTGCTGCCGCTTTGTTAGAAGATGAAACGGAGGCAACATTTACATGGTTGTTTGAACAATTTCGGACATGTATGTTTGACAAGTCTCCTGTTGCTATTATCACTGATCAAGATAAAGCTATGGGAAAAGCAATTGCCAAGGTATTTCCAAGAGCACGACATCGTTTTTGCGCTTGGCATATAAAGAAACATGTTATGGAGCACAGTCAAGCTCTACGCGCACAATTTAAAGATAGCTTTGATGTTGACTTCCGTGTGTGGTATAAAAGTCGAAACATTGACGAGTTTGAAGGCAAATGGGAAGTATTGAGGACTAAATATGTTATTAAAGCAGATAGTTGGCTAGCTAACATGTATTCTTCACGTCATCATTGGGCAAAGGCATACTTGAAAGATACATTTTTTGCCGGAATGACCACAAGTGGCCGAAGTGAGAGCATCAATGCATTTTTTGATGGATATGTCAACTCTAACACAATGTTAAATGATTTTGTTATCCAGTATGACAAAGCAATCAAATCTAGGAGGGATGCGGAAGAAGATGAGGATTTCAAAACTAGAAATACAAAAGCAGTTTTGGAGACTAATCATCCTATTGAAGCAATAGCTGGAGAACGGTATACAAGAAAATTATTTGAAATTTTCAAAAAGGAGTGGAAGGCTGCCATACTTGATTTTTTTCATGAAAAGATTGCAACAAAGGAAAACCTTATCACATATCGGGTGGGGTCTCCTAAAGTTGATAAAGAATGGTGGGCAATTGTAGAGTACCATTTGACAGAAAGCTTCACAGCTCAATGTTCGTGTGCAAAGTTTGAGACTATGGGGATTTTGTGTAAACATATTCTATACATTATGAAGAAGAAACAAATAATGACCCTTCCTGAAAAATACATCTTGTCTAGATGGACCATGAATGCAATCTATAAGGCTGAAAATCTTGTACCCGTTCACGATGAAACAAATCCTAATGGAATTAGTGCATTGTCTTTGTGGTCGATTCATTCGAAGTGCACTATGGCTATTTCTGAAGCAAGAGATTCTATTTTTGAGATTAAAAGATTTGATGCTATGGTTGCTGAATTTCTACAACAACAGTTGGAAAGAAAAAGAAAAAGAGGTGAAGATGAACTAATTACCCAAACAATTCCACAAGCTTCACTCATTAATAATGTGCGTGATCTCACTCAACCAGTCAAAATTGAAGGGTTTCCAGATTCTAGGACTTTAGCCACCCTAAAGTGTAAGATGGCACAAGTGAGGAACAAACAAGTGATTCTAGTTGACTATGTTACAGGTTTTCCTCAGGAAACAGACATGAACATTGTTGAAAGTACCATAATTTTGAAGGTTCCAGAAGGTTCCAATGAAGTGCTGCTCAAGAATCTTTACTTGTCATGTGACCCTTACATGAGAATCCTCATGACCAAGGAAGGTCATGGGGGTCTTCATGCTTACACCCCTGGCTCTCCATTAGCAGGACTTGGGGTGGCTAAAGTCCTAGAATCTGGACACCCTGATTATAAGAAAGGTGATTTAGTATGGGGTTCTACTAAATGGGAAGAGTATAGCTTGGTCCCCTCAACTCAAATACTTTTCAAAATTGAGCACACTGATGTCCCACTTTCCTACTATACTGGAATTCTTGGTATGCCAGGCATGACAGCTTATGCTGGATTCTTTGAAGTAGGATCTCCCAAGAAAGGAGAGAATGTTTTTGTTTCAGCTGCCTCTGGTGCTGTTGGTCAACTTGTTGGTCAATTCGCTAAATTGACTGGTTGTTATGTTGTTGGAAGTGCCAGAAGTAAAGAGATGGTGGATCTGTTGAAGAACAAATTAGGATTTGATGAAGCTTTTGACTACAAAGAAGAGCCAGACCTCAATGCAGCTTTGAAAAGGTACTTTCCAGAAGGCATTGACATTTACTTTGACAATGTTGGGGGCAAGACACTTGATGCTGTACTATTGAATATGAGAGTCCATGGACGCATACCTATCTGTGGAATGGTGTCACAGGATAATCTTACTCAATTTGAAGGTGTAACAAATTTGACAAATCTTATATATAAGCGGGTTCTTATGCAAGGTTTTCATGTTTTTGATTTCTTTCACCTATATCCCAAATTCTTGGAGTTCCTTCTGCCTCGTATAAGAGAAGAGAAGGTTGTGTATGTTGAAGACATAGCTAAGGGCCTTGAAAATGGCCCTGCAGCTTTGGTTGGCCTCTATAGTGGTCGCAATGTTGGTAAACAAGTGCTTGTTGTTGCTCATGAATGA 3249 0.3829 MDHSQVVTIEDIDISGSFVCVDDIVDLEKVTDGFREDDHSEIMANKDGECEEDHAHEIVGHVDIELSETLILTRVFGTSEEAYAFYDAYAKVKGFRIRKQYHNKSTITKQPYRWNYVCSNQGVKRLCDKRINVDKVKRRTDTRTNCLAMLQIKLVDGLWKVEKFNDTHNHPLINTPTKVKKFLSENELRCSDSTKSVVSKLFQEGLTSSTISKVVSAMNKEVNLTPVQINSIISSQRKNNVGRECQCIIKHFQRMSMVDGAFYFDMHLAEDGTLRSIFWADGRSRAAYAHFGEVLVFDVTYKTNKFKFPFAPFVGVNHHGQTILFAAALLEDETEATFTWLFEQFRTCMFDKSPVAIITDQDKAMGKAIAKVFPRARHRFCAWHIKKHVMEHSQALRAQFKDSFDVDFRVWYKSRNIDEFEGKWEVLRTKYVIKADSWLANMYSSRHHWAKAYLKDTFFAGMTTSGRSESINAFFDGYVNSNTMLNDFVIQYDKAIKSRRDAEEDEDFKTRNTKAVLETNHPIEAIAGERYTRKLFEIFKKEWKAAILDFFHEKIATKENLITYRVGSPKVDKEWWAIVEYHLTESFTAQCSCAKFETMGILCKHILYIMKKKQIMTLPEKYILSRWTMNAIYKAENLVPVHDETNPNGISALSLWSIHSKCTMAISEARDSIFEIKRFDAMVAEFLQQQLERKRKRGEDELITQTIPQASLINNVRDLTQPVKIEGFPDSRTLATLKCKMAQVRNKQVILVDYVTGFPQETDMNIVESTIILKVPEGSNEVLLKNLYLSCDPYMRILMTKEGHGGLHAYTPGSPLAGLGVAKVLESGHPDYKKGDLVWGSTKWEEYSLVPSTQILFKIEHTDVPLSYYTGILGMPGMTAYAGFFEVGSPKKGENVFVSAASGAVGQLVGQFAKLTGCYVVGSARSKEMVDLLKNKLGFDEAFDYKEEPDLNAALKRYFPEGIDIYFDNVGGKTLDAVLLNMRVHGRIPICGMVSQDNLTQFEGVTNLTNLIYKRVLMQGFHVFDFFHLYPKFLEFLLPRIREEKVVYVEDIAKGLENGPAALVGLYSGRNVGKQVLVVAHE 1082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi206g00009 1082 Pfam Zinc-binding dehydrogenase 904 1037 IPR013149 -
Gabi206g00009 1082 Gene3D - 748 1077 - -
Gabi206g00009 1082 Pfam SWIM zinc finger 588 607 IPR007527 GO:0008270
Gabi206g00009 1082 Gene3D - 872 1048 - -
Gabi206g00009 1082 Pfam N-terminal domain of oxidoreductase 747 854 IPR041694 -
Gabi206g00009 1082 PANTHER PROSTAGLANDIN REDUCTASE 744 1079 IPR045010 GO:0016628
Gabi206g00009 1082 Pfam FAR1 DNA-binding domain 85 173 IPR004330 -
Gabi206g00009 1082 SUPERFAMILY GroES-like 743 909 IPR011032 -
Gabi206g00009 1082 ProSiteProfiles Zinc finger SWIM-type profile. 581 614 IPR007527 GO:0008270
Gabi206g00009 1082 FunFam Prostaglandin reductase 2 872 1048 - -
Gabi206g00009 1082 CDD double_bond_reductase_like 744 1079 - -
Gabi206g00009 1082 SMART 26again6 589 616 IPR006564 GO:0008270
Gabi206g00009 1082 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 871 1042 IPR036291 -
Gabi206g00009 1082 Pfam MULE transposase domain 294 387 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi206g00009 Gabi-Chr206 88643 94503 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Gabi206g00009 ADH_zinc_N 2.1e-22 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi206g00009 K19825 - ecad:122594423 670.618