Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2068g00019 ATGGCAGATGAAAGCGTCAACCTTCCTCCTGGATTTCTCTTCTCTCCAACAGATGAAGAACTTGTTCTTCACTTTCTCTATTGTAAGGCTTCTCTTCTACCATACAATCCAAACATCATCCCCGATCTTGATCTGTCTCTGCATGTTCCTTGGGAATTAAATGGGAAGGCGTTGGCAAGTGGAAATCAATACTATTTCTTCACCAAAGTGAATGAAAACAGAGCCAGCACAGAAAATGGGTATTGGAAGGAAATAGGTGTCACGGAACCTATATTGTCAACCATTGACAAGAAAGTGGGAATCAAGAAGTACCTAATATTCCACATTGGCGAAGCTCCACAAGGTACTCAAACCAATTGGGTGATGCAAGAATATCATATTTGCTCCAATGAGTTTGACACTGCAACATATGATCAAAGTTGGAGCAAGTGGGTTTTATGCAGAGTGTATGAAAAGAACTGGTCTCAACAAGGTGTAAACTTCTCTAGTGATGACGATGACAGTGGAACGGAGCTTTCTTTGCTTGATGAAGTTTATTTGTCGTTGGATGATGATCTGGAAGAAATAAGCATGCCTAATTAG 582 0.4055 MADESVNLPPGFLFSPTDEELVLHFLYCKASLLPYNPNIIPDLDLSLHVPWELNGKALASGNQYYFFTKVNENRASTENGYWKEIGVTEPILSTIDKKVGIKKYLIFHIGEAPQGTQTNWVMQEYHICSNEFDTATYDQSWSKWVLCRVYEKNWSQQGVNFSSDDDDSGTELSLLDEVYLSLDDDLEEISMPN 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2068g00019 193 ProSiteProfiles NAC domain profile. 8 152 IPR003441 GO:0003677|GO:0006355
Gabi2068g00019 193 Gene3D NAC domain 17 156 IPR036093 GO:0003677|GO:0006355
Gabi2068g00019 193 SUPERFAMILY NAC domain 4 152 IPR036093 GO:0003677|GO:0006355
Gabi2068g00019 193 PANTHER NAC TRANSCRIPTION FACTOR 56 8 159 - -
Gabi2068g00019 193 Pfam No apical meristem (NAM) protein 9 127 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2068g00019 Gabi-Chr2068 178137 180431 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2068g00019 1 157 NAC Transcription Factor Family AT1G61110 40.556 1.05e-38 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi2068g00019 NAM 2.5e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2068g00019 - - gmx:100170711 322.398