Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2068g00004 ATGGGATCTCAAGGGGGGACAATACAAGAGCCAAAAAATGCACCTTTGGCTAGGGAAGGGTCCTTGTATAATCTGACCCTTGATGAGGTGCAGAACCAGCTTGGAAATTTGGGGAAACCACTTGGAAGCATGAATCTGGATGAGCTTCTCAAGAGTGTGTGGAGTGTTGATGCTAGTGATGCCTCAGGATTGGATTTTGGTGGTGATGCTAACATGCAACATGGTCAAGTTGCTTCTGGGTCCTCTTTGAATCCACAAGGGAGCTTAACTTTGTGTGGGGATCTTAGCAAGAAAACTGTTGATGAGGTTTGGAGAGATATGCAACTGAAGAAGAGTACTAATATGGATAGGAAAGTCCATGAGAGACAACCTACACTGGGTGAGATGACCTTGGAGGATTTCTTGGTGAAGGCTGGAGTGGCTGCTGAATCTTTTCCTACCAAGGATGGTGCTATGGAAGTGGTTGATTCAAATGGGGCTTCCCAACAAAATGTTTCACAACATGGTCATTGGATGCAATACCAGCTCCCTTCAGTGCAGCAGCCTCTACAACAGCATCAGCATCAAAATCAGCAAAAAAATTTGATGGGGGGTTTTGTGGCTGGTCATGCCATTCAACAGCCTTTCCAGGTTGCGGTGAGTCCAATTTTGGATGCAACATACTCTGAAGCAATGGTGACAATGTCACCATCTTCTTTAATAGGTACATTATCAGATACACAAACTCCAGGTCGGAAAAGGGTTGCCTCTGGTAATGTGGTTGAGAAAACTGTGGAGAGGAGGCAGAAGCGGATGATTAAGAATAGGGAATCTGCTGCTCGGTCACGAGCAAGAAAACAGGCTTATACACAAGAACTGGAAATTAAAGTTTCGCATTTAGAAGAGGAGAACGAAAGGCTGAGAAAACAGAATGAGATAGAGAGGGTGTTGCCAAGTGTGCCACCACCTGAGCCTAAGAATCAGCTTCGAAGAACTAGCTCAGCGTCCTTTTGA 993 0.4522 MGSQGGTIQEPKNAPLAREGSLYNLTLDEVQNQLGNLGKPLGSMNLDELLKSVWSVDASDASGLDFGGDANMQHGQVASGSSLNPQGSLTLCGDLSKKTVDEVWRDMQLKKSTNMDRKVHERQPTLGEMTLEDFLVKAGVAAESFPTKDGAMEVVDSNGASQQNVSQHGHWMQYQLPSVQQPLQQHQHQNQQKNLMGGFVAGHAIQQPFQVAVSPILDATYSEAMVTMSPSSLIGTLSDTQTPGRKRVASGNVVEKTVERRQKRMIKNRESAARSRARKQAYTQELEIKVSHLEEENERLRKQNEIERVLPSVPPPEPKNQLRRTSSASF 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2068g00004 330 CDD bZIP_plant_BZIP46 260 305 - -
Gabi2068g00004 330 MobiDBLite consensus disorder prediction 305 330 - -
Gabi2068g00004 330 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 263 278 IPR004827 GO:0003700|GO:0006355
Gabi2068g00004 330 Coils Coil 283 310 - -
Gabi2068g00004 330 Gene3D - 258 309 - -
Gabi2068g00004 330 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 258 303 IPR004827 GO:0003700|GO:0006355
Gabi2068g00004 330 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 16 329 IPR043452 GO:0003700|GO:0045893
Gabi2068g00004 330 SUPERFAMILY Leucine zipper domain 260 306 IPR046347 GO:0003700|GO:0006355
Gabi2068g00004 330 Pfam bZIP transcription factor 260 305 IPR004827 GO:0003700|GO:0006355
Gabi2068g00004 330 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 2 258 310 - -
Gabi2068g00004 330 SMART brlzneu 256 324 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2068g00004 Gabi-Chr2068 39498 46569 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2068g00004 1 330 bZIP Transcription Factor Family AT3G56850 57.612 8.23e-113 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gabi2068g00004 bZIP_1 1.6e-13 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2068g00004 K14432 - gmx:100170741 449.899