Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2068g00001 ATGGGGAGAAAGCGAAAATTGCCAGCTAAATCCGCTCAATCGGCGCAAGTGGAAGAACCCCCACTCAAACAACAACATCAATTCGATTTGGAAGCAGTGTACGAGGAAGTCGAAGAAGAAGTAGAAGAAGAAATCGAAGAGGAGCCACAAGAAGAGGTAGAACAAGAAGAAGAACAAGAGAATGAAGAAGAAGAAGAAGAAGAAGACGAAGAGGAAGAGGAAGAGGACAATCATGCACAAAACGCTAATGATCAGACGGTTAAGGCGCCATCCACGTCAGCACCCACGGTGAACGACGTGGAAGACGACGAGGACGAGCCGATCCAGAAGCTTCTAGAACCTTTCGGAAAGGACGAGATCGCGAGGCTTCTGTGCGATGCCGCGAGCAAGCACCGCGATGTGGCGGAACGGATCCGGAAGGTGGCGGACTCCGATCCCTCACACCGGAAAATCTTCGTTCACGGCCTCGGTTGGGACACCACCGCCGAAACCCTAACCGCCGCTTTCGGACAATACGGCGAGATCGAAGACTGCAAGGCCGTCTGCGACAAGATCTCCGGGAAATCCAAGGGCTACGGCTTCATCCTCTTCAAGTCCCGCCGCGGTGCTCGCCTTGCGCTCAGGGAGCCGCAGAAGAAGATCGGTAACCGAATGACAGCCTGCCAGCTGGCATCAATCGGTCCGGTCCAGCAGCCAAATAACCTCGCCGGTGTCGGAGTTCCGATGGCACAACCGAATTTTGTTACCACCGCGCCCCCTGGGGCAGTGGAATTCACGCAGAGGAAGATCTACGTGAGCAATGTGGGTTCCGAATTGGACCCGCAGAGGCTGCTGGCGTTCTTCTCGCGGTTCGGGGAGATTGAGGATGGGCCGTTAGGGCTTGACAAGTTGACGGGAAAACCCAAGGGGTTCTGCTTGTTCGTTTATAAGAGCGCGGAGAGTGCGAAGAGGGCTTTAGAGGAGCCGCACAAGGAGTTCGAAGGCCACATTTTGCATTGCCAAAAAGCTATTGATGGTCCCAAGCGATTTGGAATGCAGCAGCAATACCCACCACTGCAACAACATCATCAGAATAATGCTCAGAGGGCGACGGTGGCTGCAGCCACAACGACAGCAACTCAGTTTCAGAGAAATGGGAATCCTGGCTTTGTTGGTGGCGTTGCAGCTGCCACGCCAGGGCACTTGATGGCACCGGCGGGGCCGGCAATCGGGTATAACCAGGGGGGAGCTGCGGCGGCTGCTGCACAGGCGCTGAATCCTGCTCTTGGGCAGGCATTGACAGCCTTGCTGGCTTCTCAGGGTGCCGGCTTGGGGCTGACTGGTTTGTTGGGGACACTAGGATCGCAGGCGGCTGTGAACCCGGCTGGACATGGAATGCAGGGTGGTTATGGTAGCCAGGCAAATGTGAATTCCGGGGCTATTGGGGGATATGGGAATCAAGTAGGATTGCAGAGTGCATATCCCAACCAGCAGGTGGGGCAAGGTGGTTCTGGAAGAGGGCAGCAGCAGCAGCAGCAGCATGGTGTTGGGCAATATGGTGGTGTTGCCCCTTACATGGGCCATTAG 1566 0.5568 MGRKRKLPAKSAQSAQVEEPPLKQQHQFDLEAVYEEVEEEVEEEIEEEPQEEVEQEEEQENEEEEEEEDEEEEEEDNHAQNANDQTVKAPSTSAPTVNDVEDDEDEPIQKLLEPFGKDEIARLLCDAASKHRDVAERIRKVADSDPSHRKIFVHGLGWDTTAETLTAAFGQYGEIEDCKAVCDKISGKSKGYGFILFKSRRGARLALREPQKKIGNRMTACQLASIGPVQQPNNLAGVGVPMAQPNFVTTAPPGAVEFTQRKIYVSNVGSELDPQRLLAFFSRFGEIEDGPLGLDKLTGKPKGFCLFVYKSAESAKRALEEPHKEFEGHILHCQKAIDGPKRFGMQQQYPPLQQHHQNNAQRATVAAATTTATQFQRNGNPGFVGGVAAATPGHLMAPAGPAIGYNQGGAAAAAAQALNPALGQALTALLASQGAGLGLTGLLGTLGSQAAVNPAGHGMQGGYGSQANVNSGAIGGYGNQVGLQSAYPNQQVGQGGSGRGQQQQQQHGVGQYGGVAPYMGH 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2068g00001 521 Coils Coil 27 83 - -
Gabi2068g00001 521 Gene3D - 125 233 IPR012677 -
Gabi2068g00001 521 SUPERFAMILY RNA-binding domain, RBD 247 355 IPR035979 GO:0003676
Gabi2068g00001 521 MobiDBLite consensus disorder prediction 488 510 - -
Gabi2068g00001 521 MobiDBLite consensus disorder prediction 33 78 - -
Gabi2068g00001 521 MobiDBLite consensus disorder prediction 1 105 - -
Gabi2068g00001 521 SUPERFAMILY RNA-binding domain, RBD 140 234 IPR035979 GO:0003676
Gabi2068g00001 521 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 263 331 IPR000504 GO:0003723
Gabi2068g00001 521 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 151 217 IPR000504 GO:0003723
Gabi2068g00001 521 MobiDBLite consensus disorder prediction 488 513 - -
Gabi2068g00001 521 Gene3D - 241 351 IPR012677 -
Gabi2068g00001 521 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 261 337 IPR000504 GO:0003723
Gabi2068g00001 521 SMART rrm1_1 150 222 IPR000504 GO:0003723
Gabi2068g00001 521 SMART rrm1_1 262 334 IPR000504 GO:0003723
Gabi2068g00001 521 MobiDBLite consensus disorder prediction 82 97 - -
Gabi2068g00001 521 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 149 226 IPR000504 GO:0003723
Gabi2068g00001 521 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 41 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2068g00001 Gabi-Chr2068 11517 17814 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2068g00001 257 347 C2H2 Transcription Factor Family AT2G19380 31.868 2.48e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2068g00001 K12741 - qsu:112025393 515.768