Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2062g00001 ATGGGCTCAATGAACACAAACAACTGGCTTTCGTTTCCACTTTCTCCAACTCATTCTTCCTTACCAGCTCATATCCAAGAAACTCAATCTCATCAGTTTTCTCTTGGGACATTAGTCAATGAGAACATGGAAAGCTCTTTTCAAAATCACGATTGGAATCTGATTAATACTCACAGCAGCAACGAAGTTCCGAAGGTAGCAGATTTTCTTGGTGTGAGCAAGTCTGAAAATCAGTCAGATCTAGCAGCCTTTAATGAGATTCAGTCAAATGATTCAGATCATTACATGTTCACGACCAACAGTCTTGTGCCGATGCAAAACTCGGTGGTACCCACTTCAAGCAATTATGAGTATCAAGAAAATGCTAACAATAATCTGCAGTCATTGACATTGTCCATGGGAAGTGGTAAGGGTTCAACATGCGAAACCACCAGCGGTGATAATAGTACAAACAGTACTACTGTTGAAGCTGCACCTAGAAGAGCATTGGATACCTTTGGGCAGAGAACATCAATATATCGTGGTGTAACTAGACATAGATGGACGGGAAGGTATGAAGCACATCTTTGGGATAATAGCTGTCGAAGGGAAGGACAATCAAGAAAAGGTCGACAAGTCTATTTGGGTGGGTATGACAAGGAAGAGAAAGCAGCGAGATCTTATGATTTAGCTGCACTGAAGTATTGGGGTACATCCACCACTACCAACTTTCCCATCAGTAACTATGAGAAGGAACTTGAAGAAATGAAGCACATGACAAGGCAAGAATTTGTGGCCTCCATAAGAAGGAAGAGCAGTGGATTCTCGAGGGGTGCATCAATGTATCGCGGAGTCACAAGGCATCATCAACACGGAAGATGGCAAGCGAGGATAGGAAGAGTAGCGGGAAACAAAGATCTTTACTTGGGAACTTTCAGTACTGAGGAAGAGGCAGCGGAAGCATACGACATAGCAGCGATAAAGTTCAGAGGTCTGAACGCAGTTACTAACTTTGACATGAATCGTTACGATGTGAAAGCCATTCTTGAAAGCAACACTCTCCCAATAGGAGGAGGAGCTGCTAAGAGACTAAAGGAGGCTCAAGCTTTGGAATCTTCGAGAAAAAGGGAAGAGATGTTAGCACTTGGAAACAGCTTTCAATATGGAAGCTCAAGCTCAAGCAGGCTACAAGGTTATCCTCTAATGCAAATGCACCATCAGTTTGATCAACCTCAACCTTTGCTAACACTACAAAACCAAGACATATCTCAGTACAGTCAAGACCCTACGTCGTCGTTTCATCAGAGTTATATCCAAACCCAGCTTCAGTTGCAGCAGCAAAGTGGCTCATATATTCACCACCAATCAGCGCCTCAGAATATCAATGGTCAGTTCTACAATAGCTACCTTCAGAACCACCCGGCTTTGCTTCAGGGGTTGATGAACATTGGCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAACTGTGATGGAGAATAATAGTGGAGGCTTTATGTTCATGGGGAATAATAATGGCCTTGGCATGGCTTCGAATTCTTCTTCGAGTAACGCAGTGGGATCAGCGGAAGAGCTTGCGCTTGTTAAGGTTGATTACGACATGCCTTCCGGTGGTTATGGCGGCTGGTCGGCGGCGGAAGACACCATGCAGGCTTCAAATGCTGGTGTTGGTCTTTTTACAATGTGGAATGATTGA 1692 0.4379 MGSMNTNNWLSFPLSPTHSSLPAHIQETQSHQFSLGTLVNENMESSFQNHDWNLINTHSSNEVPKVADFLGVSKSENQSDLAAFNEIQSNDSDHYMFTTNSLVPMQNSVVPTSSNYEYQENANNNLQSLTLSMGSGKGSTCETTSGDNSTNSTTVEAAPRRALDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARSYDLAALKYWGTSTTTNFPISNYEKELEEMKHMTRQEFVASIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMNRYDVKAILESNTLPIGGGAAKRLKEAQALESSRKREEMLALGNSFQYGSSSSSRLQGYPLMQMHHQFDQPQPLLTLQNQDISQYSQDPTSSFHQSYIQTQLQLQQQSGSYIHHQSAPQNINGQFYNSYLQNHPALLQGLMNIGSSSSSSSSSSTVMENNSGGFMFMGNNNGLGMASNSSSSNAVGSAEELALVKVDYDMPSGGYGGWSAAEDTMQASNAGVGLFTMWND 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2062g00001 563 CDD AP2 273 332 IPR001471 GO:0003700|GO:0006355
Gabi2062g00001 563 ProSiteProfiles AP2/ERF domain profile. 274 332 IPR001471 GO:0003700|GO:0006355
Gabi2062g00001 563 SUPERFAMILY DNA-binding domain 273 333 IPR016177 GO:0003677
Gabi2062g00001 563 SUPERFAMILY DNA-binding domain 171 240 IPR016177 GO:0003677
Gabi2062g00001 563 ProSiteProfiles AP2/ERF domain profile. 172 238 IPR001471 GO:0003700|GO:0006355
Gabi2062g00001 563 MobiDBLite consensus disorder prediction 134 155 - -
Gabi2062g00001 563 PRINTS Ethylene responsive element binding protein signature 314 334 IPR001471 GO:0003700|GO:0006355
Gabi2062g00001 563 PRINTS Ethylene responsive element binding protein signature 173 184 IPR001471 GO:0003700|GO:0006355
Gabi2062g00001 563 Pfam AP2 domain 275 324 IPR001471 GO:0003700|GO:0006355
Gabi2062g00001 563 Pfam AP2 domain 172 230 IPR001471 GO:0003700|GO:0006355
Gabi2062g00001 563 CDD AP2 171 240 IPR001471 GO:0003700|GO:0006355
Gabi2062g00001 563 Gene3D AP2/ERF domain 172 240 IPR036955 GO:0003700|GO:0006355
Gabi2062g00001 563 Gene3D AP2/ERF domain 274 334 IPR036955 GO:0003700|GO:0006355
Gabi2062g00001 563 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 64 433 - -
Gabi2062g00001 563 SMART rav1_2 274 338 IPR001471 GO:0003700|GO:0006355
Gabi2062g00001 563 SMART rav1_2 172 244 IPR001471 GO:0003700|GO:0006355
Gabi2062g00001 563 FunFam AP2-like ethylene-responsive transcription factor 273 334 - -
Gabi2062g00001 563 FunFam AP2-like ethylene-responsive transcription factor ANT 171 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2062g00001 Gabi-Chr2062 24613 27229 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2062g00001 4 563 AP2-EREBP Transcription Factor Family AT1G51190 62.706 0.0 663
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Gabi2062g00001 AP2 6.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2062g00001 K09285 - gmx:100788471 819.69